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Remove intent-to-add from stageFiles #4634

@axosoft-ramint

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@axosoft-ramint

Intent-to-add staging puts the index in an unstable state, causes stash to fail, causes files to remain in index after deleted, etc. and should be avoided until git improves support for it.

If we want files temporarily staged, we should fully add them to the index before doing our temp ops and then remove them.

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