Add information on software environment

Author: gjbex

environment.yml

@@ -0,0 +1,18 @@
+name: scientific_python
+channels:
+  - defaults
+dependencies:
+  - bokeh
+  - ipywidgets
+  - jupyter
+  - matplotlib
+  - numexpr
+  - numpy
+  - opencv
+  - pandas
+  - pytables
+  - python=3.7.5
+  - scikit-image
+  - scipy
+  - sympy
+  - xlrd=1.2.0=py37_0

scientific_python_linux64_conda_specs.txt

@@ -0,0 +1,150 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda
+https://repo.anaconda.com/pkgs/main/linux-64/blas-1.0-mkl.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ca-certificates-2019.10.16-0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/intel-openmp-2019.4-243.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgfortran-ng-7.3.0-hdf63c60_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libstdcxx-ng-9.1.0-hdf63c60_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-9.1.0-hdf63c60_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl-2019.4-243.conda
+https://repo.anaconda.com/pkgs/main/linux-64/bzip2-1.0.8-h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/expat-2.2.6-he6710b0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/freeglut-3.0.0-hf484d3e_5.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gmp-6.1.2-h6c8ec71_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/graphite2-1.3.13-h23475e2_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/icu-58.2-h9c2bf20_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/jpeg-9b-h024ee3a_2.conda
+https://repo.continuum.io/pkgs/main/linux-64/libffi-3.2.1-hd88cf55_4.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/libglu-9.0.0-hf484d3e_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libopus-1.3-h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libsodium-1.0.16-h1bed415_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libuuid-1.0.3-h1bed415_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libvpx-1.7.0-h439df22_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxcb-1.13-h1bed415_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/lz4-c-1.8.1.2-h14c3975_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/lzo-2.10-h49e0be7_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ncurses-6.1-he6710b0_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/openssl-1.1.1d-h7b6447c_3.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pcre-8.43-he6710b0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pixman-0.38.0-h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/snappy-1.1.7-hbae5bb6_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/xz-5.2.4-h14c3975_4.conda
+https://repo.continuum.io/pkgs/main/linux-64/yaml-0.1.7-had09818_2.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.2.11-h7b6447c_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/glib-2.63.1-h5a9c865_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/hdf5-1.10.2-hba1933b_1.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jasper-2.0.14-h07fcdf6_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libedit-3.1.20181209-hc058e9b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libpng-1.6.37-hbc83047_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxml2-2.9.9-hea5a465_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mpfr-4.0.1-hdf1c602_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pandoc-2.2.3.2-0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/readline-7.0-h7b6447c_5.conda
+https://repo.anaconda.com/pkgs/main/linux-64/tk-8.6.8-hbc83047_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/zeromq-4.3.1-he6710b0_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/zstd-1.3.7-h0b5b093_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/blosc-1.16.3-hd408876_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/dbus-1.13.12-h746ee38_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/freetype-2.9.1-h8a8886c_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gstreamer-1.14.0-hb453b48_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libtiff-4.1.0-h2733197_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/mpc-1.1.0-h10f8cd9_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/sqlite-3.30.1-h7b6447c_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/ffmpeg-4.0-hcdf2ecd_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/fontconfig-2.13.0-h9420a91_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gst-plugins-base-1.14.0-hbbd80ab_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/python-3.7.5-h0371630_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/attrs-19.3.0-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/backcall-0.1.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/cairo-1.14.12-h8948797_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/certifi-2019.9.11-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/cloudpickle-1.2.2-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/dask-core-2.7.0-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/decorator-4.4.1-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/defusedxml-0.6.0-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/entrypoints-0.3-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/fastcache-1.1.0-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gmpy2-2.0.8-py37h10f8cd9_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ipython_genutils-0.2.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/kiwisolver-1.1.0-py37he6710b0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/markupsafe-1.1.1-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mistune-0.8.4-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/more-itertools-7.2.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mpmath-1.1.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/olefile-0.46-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pandocfilters-1.4.2-py37_1.conda
+https://repo.anaconda.com/pkgs/main/noarch/parso-0.5.1-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pickleshare-0.7.5-py37_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/prometheus_client-0.7.1-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/ptyprocess-0.6.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/pyparsing-2.4.4-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/pytz-2019.3-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pyyaml-5.1.2-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pyzmq-18.1.0-py37he6710b0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/qt-5.9.7-h5867ecd_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/send2trash-1.5.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/sip-4.19.8-py37hf484d3e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/six-1.13.0-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/testpath-0.4.2-py37_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/toolz-0.10.0-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/tornado-6.0.3-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/wcwidth-0.1.7-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/webencodings-0.5.1-py37_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/xlrd-1.2.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/cycler-0.10.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/cytoolz-0.10.0-py37h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/harfbuzz-1.8.8-hffaf4a1_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jedi-0.15.1-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl-service-2.3.0-py37he904b0f_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mock-3.0.5-py37_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/packaging-19.2-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pexpect-4.7.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pillow-6.2.1-py37h34e0f95_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pyqt-5.9.2-py37h05f1152_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pyrsistent-0.15.4-py37h7b6447c_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/python-dateutil-2.8.1-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/setuptools-41.6.0-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/terminado-0.8.2-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/traitlets-4.3.3-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/zipp-0.6.0-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/bleach-3.1.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/importlib_metadata-0.23-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/jinja2-2.10.3-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jupyter_core-4.6.1-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/libopencv-3.4.2-hb342d67_1.conda
+https://repo.anaconda.com/pkgs/main/noarch/networkx-2.4-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/numpy-base-1.17.3-py37hde5b4d6_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/pygments-2.4.2-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/sympy-1.4-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/wheel-0.33.6-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jsonschema-3.1.1-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jupyter_client-5.3.4-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/pip-19.3.1-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/prompt_toolkit-2.0.10-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/ipython-7.9.0-py37h39e3cac_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/nbformat-4.4.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ipykernel-5.1.3-py37h39e3cac_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/nbconvert-5.6.1-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jupyter_console-6.0.0-py37_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/notebook-6.0.2-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/noarch/qtconsole-4.5.5-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/widgetsnbextension-3.5.1-py37_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/ipywidgets-7.5.1-py_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/jupyter-1.0.0-py37_7.conda
+https://repo.anaconda.com/pkgs/main/linux-64/bokeh-1.4.0-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/imageio-2.6.1-py37_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/matplotlib-3.1.1-py37h5429711_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl_fft-1.0.15-py37ha843d7b_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/mkl_random-1.1.0-py37hd6b4f25_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/numpy-1.17.3-py37hd14ec0e_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/numexpr-2.7.0-py37h9e4a6bb_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pandas-0.25.2-py37he6710b0_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/py-opencv-3.4.2-py37hb342d67_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pywavelets-1.1.1-py37h7b6447c_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/scipy-1.3.1-py37h7c811a0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/opencv-3.4.2-py37h6fd60c2_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pytables-3.4.4-py37ha205bf6_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/scikit-image-0.15.0-py37he6710b0_0.conda

source-code/README.md

@@ -6,19 +6,19 @@ to create it.  There is some material not covered in the presentation as well.
 ## Requirements
 
 * Python version: at least 3.6
-* Packages:
+* Packages (names listed taht can be used with `pip` or `conda` to install):
   * numpy
   * scipy
   * matplotlib
   * bokeh
   * sympy
   * pytables
-  * skimage
-  * Jupyter notebook
+  * scikit-image
+  * jupyter
   * ipywidgets
 * Optional packages
   * opencv
-  * mumexpr
+  * numexpr
   * pandas
 
 ## What is it?