dtangle: a method for cell-type deconvolution we recommend using our updated deconvolution approach hspe, available here Software dtangle is an R package for cell type deconvolution. The R package is available on CRAN, on github, or from my box: package (source). Vignettes Bulk RNA-seq and microarrays: here (html rmd) Using single-cell RNA-seq as references: here (html rmd) PBMC microarray deconvolution: here (html rmd) Papers 1. "dtangle: accurate and robust cell type deconvolution" Bioinformatics (2019) Our publication in Bioinformatics is accessible here. Our docker image for reproducing the analysis in paper can be found here. A package dtangle.data of benchmark deconvolution data sets can be found here (source). The scripts for the analysis in our bioinformatics paper can be found here or here
