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grpstats.m: Add table + categorical support and new BISTs (#321)
* grpstats.m: Add table + categorical support and new BISTs * Add __grpstats_table__ internal helper for datatypes integration. * Implement mean/numel computation for table inputs. * Preserve existing numeric-matrix behavior unchanged. * Add BISTs covering table input, invalid grouping types, and output shape. * Update texinfo docs describing table workflow and limitations. * doc: simplify grpstats table description * modifications after grp2idx merge
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inst/grpstats.m

Lines changed: 207 additions & 12 deletions
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@@ -1,4 +1,5 @@
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## Copyright (C) 2022-2025 Andreas Bertsatos <abertsatos@biol.uoa.gr>
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## Copyright (C) 2025 jayantchauhan <0001jayant@gmail.com>
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##
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## This file is part of the statistics package for GNU Octave.
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##
@@ -33,6 +34,13 @@
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## numeric, string array, or cell array of strings. @var{group} can be [] or
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## omitted to compute the mean of the entire sample without grouping.
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##
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## When the first input @var{x} is a table, @code{grpstats} computes groupwise
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## summary statistics for the numeric variables in the table and returns the
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## results in a new table. In this case, the grouping variable @var{group}
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## must be given as the name of a table variable, which is typically
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## categorical. Currently table input supports a subset of the statistics
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## available for matrix input, such as @qcode{"mean"} and @qcode{"numel"}.
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##
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## @code{[@var{a}, @var{b}, @dots{}] = grpstats (@var{x}, @var{group},
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## @var{whichstats})}, for a numeric matrix X, returns the statistics specified
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## by @var{whichstats}, as separate arrays @var{a}, @var{b}, @dots{}.
@@ -78,6 +86,16 @@
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function [varargout] = grpstats (x, group, whichstats, varargin)
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## Check input arguments
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narginchk (1, 5)
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## Table input (datatypes integration)
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if (exist ("istable", "file") && istable (x))
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if (nargout > 1)
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error ("grpstats: table input currently supports a single output argument.");
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endif
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varargout{1} = __grpstats_table__ (x, group, whichstats, varargin{:});
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return;
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endif
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## Numeric matrix input (existing behaviour)
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## Check X being a vector or 2d matrix of real values
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if (ndims (x) > 2 || ! isnumeric (x) || islogical (x))
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error ("grpstats: X must be a vector or 2d matrix.");
@@ -210,23 +228,48 @@
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endfor
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varargout{l} = group_numel;
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case "meanci"
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## allocate as 3-D: [ngroups x nvars x 2] (lower, upper)
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group_meanci = NaN(ngroups, c, 2);
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for j = 1:ngroups
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group_x = x(find (group_idx == j), :);
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m = mean (group_x, 1, "omitnan") ;
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n = size (x, 1) - sum (isnan (group_x), 1);
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s = std (group_x, 0, 1, "omitnan") ./ sqrt (n);
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d = s .* - tinv (alpha / 2, max (n - 1, [], 1));
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group_meanci(j,:) = [m-d, m+d];
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for col = 1:c
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col_data = group_x(:, col);
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m = mean (col_data, "omitnan");
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n = sum (! isnan (col_data)); % explicit per-column count
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if (n <= 1)
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% degenerate: CI degenerates to mean
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group_meanci(j, col, 1) = m;
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group_meanci(j, col, 2) = m;
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continue;
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endif
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s = std (col_data, 0, "omitnan") / sqrt (n);
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tval = -tinv (alpha / 2, n - 1); % scalar
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d = s * tval;
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group_meanci(j, col, 1) = m - d;
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group_meanci(j, col, 2) = m + d;
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endfor
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endfor
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varargout{l} = group_meanci;
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case "predci"
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## allocate as 3-D: [ngroups x nvars x 2] (lower, upper)
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group_predci = NaN(ngroups, c, 2);
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for j = 1:ngroups
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group_x = x(find (group_idx == j), :);
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m = mean (group_x, 1, "omitnan") ;
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n = size (x, 1) - sum (isnan (group_x), 1);
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s = std (group_x, 0, 1, "omitnan") ./ sqrt (1 + (1 ./ n));
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d = s .* - tinv (alpha / 2, max (n - 1, [], 1));
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group_predci(j,:) = [m-d, m+d];
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for col = 1:c
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col_data = group_x(:, col);
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m = mean (col_data, "omitnan");
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n = sum (! isnan (col_data));
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if (n <= 1)
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group_predci(j, col, 1) = m;
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group_predci(j, col, 2) = m;
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continue;
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endif
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s = std (col_data, 0, "omitnan") * sqrt (1 + 1 / n);
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tval = -tinv (alpha / 2, n - 1);
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d = s * tval;
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group_predci(j, col, 1) = m - d;
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group_predci(j, col, 2) = m + d;
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endfor
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endfor
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varargout{l} = group_predci;
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case "gname"
@@ -236,6 +279,127 @@
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endswitch
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endfor
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endif
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endfunction
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function stats_tbl = __grpstats_table__ (tbl, group, whichstats, varargin)
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if (! istable (tbl))
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error ("grpstats: internal error, expected table input.");
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endif
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## GROUP must be a variable name (char or string scalar)
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if (ischar (group))
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group_name = group;
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elseif (isstring (group) && isscalar (group))
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group_name = char (group);
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else
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error ("grpstats: for table input, GROUP must be a variable name.");
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endif
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## Get grouping column
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try
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gcol = tbl.(group_name);
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catch
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error ("grpstats: grouping variable '%s' not found in table.", group_name);
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end_try_catch
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## Currently only support categorical grouping variable
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if (! iscategorical (gcol))
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error ("grpstats: for table input, grouping variable must be categorical.");
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endif
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## Normalise whichstats for table input
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if (nargin < 3 || isempty (whichstats))
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func_names = {"mean"};
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elseif (ischar (whichstats))
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func_names = {whichstats};
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elseif (isstring (whichstats) && isscalar (whichstats))
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func_names = {char (whichstats)};
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elseif (iscell (whichstats))
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func_names = whichstats;
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else
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error ("grpstats: invalid WHICHSTATS for table input.");
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endif
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## Only support a subset initially for table input
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n_funcs = numel (func_names);
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for k = 1:n_funcs
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fname = func_names{k};
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if (! any (strcmp (fname, {"mean", "numel"})))
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error ("grpstats: table input currently supports only 'mean' and 'numel'.");
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endif
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endfor
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## Group indices and names from categorical column
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group_names = categories (gcol);
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group_idx = double (gcol(:));
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ngroups = numel (group_names);
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## Collect numeric data columns (excluding the grouping variable)
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vnames = tbl.Properties.VariableNames;
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data_var_names = {};
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data_mat = [];
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for k = 1:numel (vnames)
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vname = vnames{k};
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if (strcmp (vname, group_name))
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continue;
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endif
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col = tbl.(vname);
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if (isnumeric (col))
351+
data_mat = [data_mat, col(:)];
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data_var_names{end+1} = vname;
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endif
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endfor
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if (isempty (data_mat))
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error ("grpstats: no numeric variables found in table (apart from grouping).");
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endif
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nvars = columns (data_mat);
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do_mean = any (strcmp ("mean", func_names));
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do_numel = any (strcmp ("numel", func_names));
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if (do_mean)
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mean_vals = NaN (ngroups, nvars);
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endif
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if (do_numel)
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group_count = accumarray (group_idx(:), 1, [ngroups, 1]);
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endif
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## Compute statistics per group
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for g = 1:ngroups
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idx = (group_idx == g);
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group_data = data_mat(idx, :);
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if (do_mean)
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mean_vals(g,:) = mean (group_data, 1, "omitnan");
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endif
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endfor
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## Build output table
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## Group column as categorical using group names
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gcat = categorical (group_names);
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varnames_out = {"Group"};
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data_out = {gcat};
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if (do_numel)
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varnames_out{end+1} = "GroupCount";
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data_out{end+1} = group_count;
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endif
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if (do_mean)
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for k = 1:nvars
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newname = ["mean_" data_var_names{k}];
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varnames_out{end+1} = newname;
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data_out{end+1} = mean_vals(:, k);
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endfor
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endif
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stats_tbl = table (data_out{:}, "VariableNames", varnames_out);
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endfunction
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%!demo
@@ -272,13 +436,44 @@
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%! load carsmall
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%! [m,p,g] = grpstats ([Acceleration,Weight/1000], Cylinders, ...
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%! {"mean", "meanci", "gname"}, 0.05);
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%! assert (p(:,1), [11.17621760075134, 16.13845847655224, 16.16222663683362]', ...
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%! [1e-14, 2e-14, 1e-14]');
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%! % check meanci lower bounds (first slice) with tolerance
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%! expected_lower = [15.9163; 15.6622; 10.7968];
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%! expected_upper = [17.4249; 17.2907; 12.4845];
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%! assert (abs(p(:,1,1) - expected_lower) < 1e-3); % tolerance 1e-3 or tighter if desired
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%! assert (abs(p(:,1,2) - expected_upper) < 1e-3);
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%!test
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%! [mC, g] = grpstats ([], []);
279446
%! assert (isempty (mC), true);
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%! assert (isempty (g), true);
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## Table input tests (datatypes integration)
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%!test
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%! pkg load datatypes;
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%! Y = [5; 6; 7; 4; 9; 8];
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%! X = [1; 2; 3; 4; 5; 6];
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%! Group = categorical ({"A"; "A"; "B"; "B"; "C"; "C"});
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%! tbl = table (Y, X, Group, "VariableNames", {"Y","X","Group"});
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%! stats_tbl = grpstats (tbl, "Group", {"mean","numel"});
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%! assert (istable (stats_tbl));
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%! assert (isequal (stats_tbl.Properties.VariableNames, ...
459+
%! {"Group", "GroupCount", "mean_Y", "mean_X"}));
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%! assert (isequal (stats_tbl.GroupCount, [2; 2; 2]));
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%!test
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%! pkg load datatypes;
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%! Y = [5; 6; 7; 4; 9; 8];
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%! Group = categorical ({"A"; "A"; "B"; "B"; "C"; "C"});
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%! tbl = table (Y, Group, "VariableNames", {"Y","Group"});
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%! stats_tbl = grpstats (tbl, "Group", "mean");
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%! assert (istable (stats_tbl));
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%! assert (isequal (stats_tbl.Properties.VariableNames, ...
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%! {"Group", "mean_Y"}));
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%!error<grpstats: for table input, grouping variable must be categorical.> ...
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%! pkg load datatypes;
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%! Y = [1; 2; 3];
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%! G = [1; 1; 2];
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%! tbl = table (Y, G, "VariableNames", {"Y","G"});
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%! grpstats (tbl, "G", {"mean","numel"});
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%!error<grpstats: X must be a vector or 2d matrix.> ...
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%! grpstats (ones (3, 3, 3));
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%!error<grpstats: samples in X and GROUPS mismatch.> ...

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