Bump version to 0.2.5

Author: Loyale

README.md

@@ -11,6 +11,8 @@ Key tools:
 - `fetchMouseIndex`: download, install, and register the mm10 Bowtie2 index.
 - `buildGenomeIndex`: build and register a new reference genome index.
 
+Documentation: https://www.gofflab.org/HCRProbeDesign/
+
 ## Installation
 ### Prerequisites
 - Python >= 3.6

VERSIONINFO.md

@@ -1,3 +1,5 @@
+## v0.2.5 - Unreleased
+  + Documentation base URL updated
 ## v0.2.4 - 01.16.2026
   + Exposed package version in `HCRProbeDesign.__version__`
 ## v0.2.3 - 01.14.2026

docs/index.md

@@ -4,6 +4,8 @@ HCRProbeDesign is a command-line and Python package for designing HCR v3.0 split
 from a target FASTA sequence. It tiles target sequences, filters by GC content, melting temperature,
 homopolymers, and hairpins, and can optionally enforce genome uniqueness with Bowtie2.
 
+Documentation URL: https://www.gofflab.org/HCRProbeDesign/
+
 ## Key tools
 - `designProbes`: primary probe design CLI for single-record FASTA inputs
 - `designProbesBatch`: batch probe design for multi-record FASTA inputs

mkdocs.yml

@@ -1,6 +1,6 @@
 site_name: HCRProbeDesign
 site_description: Probe design tool for HCR v3.0 split-initiator probe pairs
-site_url: https://gofflab.github.io/HCRProbeDesign/
+site_url: https://www.gofflab.org/HCRProbeDesign/
 repo_url: https://github.com/gofflab/HCRProbeDesign
 nav:
   - Home: index.md

setup.cfg

@@ -1,7 +1,7 @@
 [metadata]
 # replace with your username:
 name = hcrprobedesign
-version = 0.2.4
+version = 0.2.5
 author = Loyal A. Goff
 author_email = loyalgoff@jhmi.edu
 description = Probe Design tool for Hybridization Chain Reaction