R package issue

[juechenyang]

Hi,

I encountered some issues while running step4 of tp53 pipeline. It responds like this:

Error in optparse::parse_args(opt_parser) :
Error in getopt(spec = spec, opt = args) :
flag "pancan_summary" requires an argument
Execution halted

Can you help me fix it? Thank you!

[gwaybio]

Hi @juechenyang - thanks for your interest in the project! And sorry for the extremely delayed reply (nearly 1 year!) Were you able to figure out the issue? Still interested?