Merge branch 'main' of https://github.com/griffithlab/CIVIC_SVI_Course into main

Author: jhudsl-robot

docs/no_toc/404.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/about-the-authors.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/assets/style_ITN.css

@@ -549,6 +549,12 @@ a.anchor:hover {
   font-size: .85em;
   color: #193a5c;
 }
+
+/* Reference List Entry */
+
+div.csl-entry {
+  margin-bottom: 0.85em; /* adds same amount of margin as a <p> would */
+}
 /*Get rid of TOC stuff from https://github.com/rstudio/bookdown/issues/1251 */
 
 .book .book-body .page-wrapper .page-inner {

docs/no_toc/conclusions.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/index.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/introduction-to-cancer-variant-knowledgebases.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/introduction-to-clingen.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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 </ul>

docs/no_toc/introduction-to-somatic-evidence-types-in-cancer.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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 </ul>

docs/no_toc/introduction-to-somatic-variants.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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docs/no_toc/introduction-to-the-civic-knowledgebase.html

@@ -156,8 +156,7 @@
 <li class="chapter" data-level="9" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>9</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
-<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
-<a href="http://jhudatascience.org/"><img src="https://jhudatascience.org/images/dasl.png" style=" width: 80%; filter: grayscale(100%); padding-left: 40px; padding-top: 8px; vertical-align: top "</a>
+<p style="text-align:center;"> <a href="https://griffithlab.org/"> The Griffith Lab </a></p>
 <p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
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