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## Color Peptides 51mer
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```
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- python3 /opt/scripts/generate_reviews_files.py --help
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- usage: generate_reviews_files.py [-h] [-a A] [-c C] [-samp SAMP] [-WB WB] [-f FIN_RESULTS]
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-
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- Create the file needed for the neoantigen manuel review
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-
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- optional arguments:
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- -h, --help show this help message and exit
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- -a A The path to the ITB Reviewed Candidates
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- -c C The path to annotated_filtered.vcf-pass-51mer.fa.manufacturability.tsv from the generate_protein_fasta script
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- -samp SAMP The name of the sample
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- -WB WB the path to the gcp_immuno folder of the trial you wish to tun script on, defined as WORKING_BASE in envs.txt
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- -f FIN_RESULTS, --fin_results FIN_RESULTS
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- Name of the final results folder in gcp immuno
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- root@02d92932f0f8:/# python3 /opt/scripts/color_peptides51mer.py --help
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+ python3 /opt/scripts/color_peptides51mer.py --help
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usage: color_peptides51mer.py [-h] -p P -classI CLASSI -classII CLASSII [-WB WB] [-samp SAMP]
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Color the 51mer peptide
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