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lines changed Original file line number Diff line number Diff line change @@ -197,6 +197,8 @@ optional arguments:
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` ` `
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# # GET FDA metrics
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python3 /opt/scripts/get_FDA_thresholds.py --help
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usage: get_FDA_thresholds.py [-h] [-WB WB] [-f FIN_RESULTS] [--n_dna N_DNA] [--t_dna T_DNA] [--t_rna T_RNA] [--una_n_dna UNA_N_DNA] [--una_t_dna UNA_T_DNA] [--una_t_rna UNA_T_RNA]
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[--somalier SOMALIER] [--contam_n CONTAM_N] [--contam_t CONTAM_T]
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--somalier SOMALIER file path for Somalier results for sample tumor/normal sample relatedness (concordance.somalier.pairs.tsv)
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--contam_n CONTAM_N file path for VerifyBamID results for contamination the normal sample
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--contam_t CONTAM_T file path for VerifyBamID results for contamination the tumor dna sample
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# # Setup Review
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