fixing spacing problem within 51mer

Author: evelyn-schmidt

scripts/color_peptides51mer.py

@@ -225,7 +225,7 @@ def create_stylized_sequence(peptide_sequence):
                 new_string += nucleotide.nucleotide
         else:
             new_string += nucleotide.nucleotide
-    return(new_string)   
+    return(new_string)
 
 def main():
     args = parse_arguments()
@@ -324,14 +324,12 @@ def main():
             print("ClassI: ", classI_peptide)
             print("ClassII: ", classII_peptide, "\n")
 
-        modified_html = peptides_51mer_soup.prettify(formatter=None)
 
-        soup = BeautifulSoup(modified_html, 'html.parser')
-        tag_with_search_string = soup.select_one('th:-soup-contains("51mer ID")')
+        tag_with_search_string = peptides_51mer_soup.select_one('th:-soup-contains("51mer ID")')
         if tag_with_search_string:
             tag_with_search_string.decompose()
         # Now 'soup' contains the modified HTML with the tag removed
-        modified_html = soup.prettify(formatter=None)
+        modified_html = peptides_51mer_soup.prettify(formatter=None)
 
     if args.WB:
         html_file_name = args.WB +  '/../manual_review/' + args.samp + ".Colored_Peptides.html"