Fix spelling errors

Author: susannasiebert

05-pvacview_tour.Rmd

@@ -186,7 +186,7 @@ for and as well as details on the transcripts itself.
 The Peptide Candidates from Selected Transcript Set tab shows a list of
 mutant and matched wildtype peptides and their IC50 binding
 affinity to the patient HLA alleles. Only neoantigen candidate were at least
-opne peptide-MHC binding prediction falls within the  `--aggregate-inclusion-threshold`
+one peptide-MHC binding prediction falls within the  `--aggregate-inclusion-threshold`
 will be shown in this table. For HLA alleles were the peptide is not
 well-binding the prediction details will show `X`. This table also shows the
 mutant position, whether or not the neoantigen candidate has any problematic
@@ -217,7 +217,7 @@ panel.
 The first tab, "IC50 Plot", shows violin plots of the predicted IC50 binding
 affinity for each prediction algorithm for both the neoantigen candidate and
 its matched wildtype peptide. This can be used to check concordance
-of predicitions between the different algorithms. It also allows for a
+of predictions between the different algorithms. It also allows for a
 detailed comparison between the mutant and wildtype predictions in addition to
 the median or lowest IC50 binding affinity used elsewhere. A solid line is used
 to represent the median score.
@@ -259,6 +259,12 @@ panel.
 ottrpal::include_slide("https://docs.google.com/presentation/d/1uz39zaObDGKhEVCGzO0JO35CTbC0oRAM0mxgLcMAA9Y/edit#slide=id.g25ad9ce8c9b_0_68")
 ```
 
+## Regenerate Tiers with Custom Parameters
+
+## Adding Comments to Variants
+
+## Exporting the Aggregated Table
+
 ## Tour of the pVACview interface
 
 Here is a brief tour of the [pVACview](https://pvactools.readthedocs.io/en/latest/pvacview.html){target="_blank"} interface:

resources/dictionary.txt

@@ -8,6 +8,7 @@ BLASTp
 Bloomberg
 Bookdown
 bioinformatics
+biotype
 CHROM
 CLI
 ClinVar
@@ -25,6 +26,8 @@ Dockerfile
 Dockerhub
 deprioritized
 dropdown
+Elution
+elution
 epitope
 epitopes
 Ensembl
@@ -46,12 +49,14 @@ HCC
 HLA
 histocompatibility
 homozygous
+hotspot
 https
 http
 IC
 IEDB
 ITCR
 ITN
+ile
 immunotherapies
 immunotherapy
 isoform