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Fix pvactools.org linkouts
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01-intro.Rmd

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vaccines. Downstream analysis commands for synthetic long peptide vaccines are available to assess candidates for factors that influence peptide synthesis. All
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of the aforementioned steps are executed via a modular workflow consisting of tools for neoantigen prediction from somatic alterations (pVACseq, pVACfuse, and pVACbind),
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prioritization, and selection using a graphical Web-based interface (pVACview), and design of DNA vector–based vaccines (pVACvector) and synthetic long peptide
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vaccines. pVACtools is available at [https://www.pvactools.org](https://www.pvactools.org).
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vaccines. pVACtools is available at [http://www.pvactools.org](http://www.pvactools.org).
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```{r, fig.align='center', out.width="100%", echo = FALSE, fig.alt= "pVACtools is a cancer immunotherapy tools suite"}
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ottrpal::include_slide("https://docs.google.com/presentation/d/1uz39zaObDGKhEVCGzO0JO35CTbC0oRAM0mxgLcMAA9Y/edit#slide=id.g22b1533a196_0_0")

02-prerequisites.Rmd

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This course will not cover the required pre-processing steps for the pVACtools
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input data but extensive instructions on how to prepare your own data for use
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with pVACtools can be found at [pvactools.org](https://www.pvactools.org)
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with pVACtools can be found at [pvactools.org](http://www.pvactools.org)

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