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README.md

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# Peptide Sequence Synthesis
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This project provides a robust, reproducible tool for generating large, high-quality reference peptide sets
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A tool for generating reference peptide sets
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## Features
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```
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Follow the prompts to select generation mode, parameters, and output file.
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## Reproducibility
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- All code and results should be managed in a git repository.
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- Document all parameters used for each run.
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- For large-scale runs, consider using a virtual environment and requirements.txt for consistent environments.
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## Version Control
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1. Initialize git:
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```bash
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git init
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```
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2. Add files and commit:
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```bash
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git add .
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git commit -m "Initial commit: peptide generator and GUI"
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```
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3. Create a GitHub repo and push:
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```bash
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git remote add origin https://github.com/yourusername/peptide-sequence-synthesis.git
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git branch -M main
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git push -u origin main
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```
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## Acknowledgements
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- [ProtGPT2](https://huggingface.co/nferruz/ProtGPT2)

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