You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
out << "\t\t" << "-E\tAnnotate variants in exonic space within a transcript(not to be used with -e)." << endl;
60
60
out << "\t\t" << "-S\tDon't skip single exon transcripts." << endl;
61
61
out << "\t\t" << "-b STR\tThe file containing the barcodes of interest for single cell data." << endl;
62
-
out << "\t\t" << "-C\tTells cis-splice-effects identify that you want intron-motif method to take priority when assigning strand. i.e. decide strandedness based on the fasta rather than what is encoded in the alignment file.
62
+
out << "\t\t" << "-C\tTells cis-splice-effects identify that you want intron-motif method to take priority when assigning strand. i.e. decide strandedness based on the fasta rather than what is encoded in the alignment file." << endl;
0 commit comments