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fix tab error
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scripts/run_stats_modified.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -32,6 +32,6 @@ def run(cmd: str) -> None:
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os.rename(bed_file, f'all_splicing_variants_{tag}.bed')
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run(f'python3 /home/ec2-user/workspace/regtools/scripts/stats_wrapper.py {tag}')
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run(f'Rscript --vanilla /home/ec2-user/workspace/regtools/scripts/filter_and_BH.R {tag}')
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run(f'aws s3 cp compare_junctions/ s3://regtools-results-unstranded/{cohort}/compare_junctions3/ --recursive)')
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os.chdir('..')
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run(f'aws s3 cp compare_junctions/ s3://regtools-results-unstranded/{cohort}/compare_junctions3/ --recursive')
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os.chdir('..')
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shutil.rmtree(cohort)

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