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Merge branch 'singlecell' of https://github.com/griffithlab/regtools into singlecell
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README.md

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[![Documentation Status](https://readthedocs.org/projects/regtools/badge/?version=latest)](https://readthedocs.org/projects/regtools/?badge=latest)
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[![Coverage Status](https://coveralls.io/repos/griffithlab/regtools/badge.svg?branch=master&service=github)](https://coveralls.io/github/griffithlab/regtools?branch=master)
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# regtools
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# RegTools
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Tools that integrate DNA-seq and RNA-seq data to help interpret mutations
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in a regulatory and splicing context.
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- Annotate exon-exon junctions with information from a known transcriptome.
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- Annotate variants with splice-region(the definition of this region is configurable) annotations.
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## Hardware requirements
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RegTools requires only a standard computer with enough RAM to support the in-memory operations.
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## Software requirements
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OS Requirements
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This package is supported for macOS and Linux. The package has been tested on the following systems:
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macOS: macOS 10.12 (Sierra), macOS 10.13 (High Sierra), macOS 10.14 (Mojave), macOS 10.15 (Catalina), macOS 11 (Big Sur), macOS 12 (Monterey)
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Linux: Ubuntu 16.04, Ubuntu 18.04, Ubuntu 20.04
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## Installation
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Clone and install regtools by running the following:

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