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1 parent e6f7307 commit 7719f55Copy full SHA for 7719f55
scripts/stats_wrapper.py
@@ -10,19 +10,14 @@
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'tag',
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help="Variant tag parameter used to run RegTools.",
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)
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-input_parser.add_argument(
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- 'cohort_directory',
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- help="Path to directory containing cohort files.",
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-)
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args = input_parser.parse_args()
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tag = args.tag
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-cohort_dir = args.cohort_directory
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lines_per_file = 50000
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smallfile = None
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-with open(f'{cohort_dir}/all_splicing_variants_{tag}.bed', 'r') as bigfile:
+with open(f'all_splicing_variants_{tag}.bed', 'r') as bigfile:
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for lineno, line in enumerate(bigfile):
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if lineno % lines_per_file == 0:
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if smallfile:
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