Update cis-splice-effects-identify.md

Author: kcotto

docs/commands/cis-splice-effects-identify.md

@@ -13,7 +13,7 @@ The `cis-splice-effects identify` command is used to identify splicing misregula
 | Input                  | Description |
 | ------                 | ----------- |
 | variants.vcf | Variant call in VCF format from which to look for cis-splice-effects.|
-| alignments.bam | Aligned RNAseq BAM/CRAM produced with a splice aware aligner, that has been indexed for example with `samtools index`. We have tested this command with alignments from TopHat.|
+| alignments.bam | Aligned RNAseq BAM/CRAM produced with a splice aware aligner, that has been indexed for example with `samtools index`. We have tested this command with alignments from HISAT2, TopHat2, STAR, kallisto, and minimap2.|
 | ref.fa          | The reference FASTA file. The donor and acceptor sequences used in the "splice-site" column of the annotated junctions are extracted from the FASTA file. |
 | annotations.gtf | The GTF file specifies the transcriptome that is used to annotate the junctions and variants. For examples, the Ensembl GTFs for release 106 are [here](http://ftp.ensembl.org/pub/release-106/gtf/).|