Merge pull request #152 from griffithlab/add_scripts

add variants.sh script

Author: kcotto

scripts/variants.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+# usage: 
+# 	bash variants.sh <input.tsv> <output.bed>
+awk 'NR>1 {print $17}' $1  > $2
+sed -ie 's/[,]/\n/g' $2
+sed -ie 's/[:\-]/\t/g' $2
+sort $2 | uniq > ${2}.tmp 
+cat ${2}.tmp > $2
+rm -f ${2}.tmp
+rm ${2}e