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lines changed Original file line number Diff line number Diff line change 23
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lines = open (input_file ).readlines ()
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count = len (lines )
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if count <= lines_per_file :
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- subprocess .run (f'Rscript --vanilla /home/ec2-user/workspace/data /compare_junctions_hist_v2.R { tag } { input_file } ' )
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+ subprocess .run (f'Rscript --vanilla /home/ec2-user/workspace/regtools/scripts /compare_junctions_hist_v2.R { tag } { input_file } ' )
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else :
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header = lines [0 ]
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lines .pop (0 )
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files .sort ()
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number_of_in_files = len (files )
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for file in files :
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- subprocess .run (f'Rscript --vanilla compare_junctions_hist_v2.R { tag } { file } ' , shell = True , check = True )
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+ subprocess .run (f'Rscript --vanilla /home/ec2-user/workspace/regtools/scripts/ compare_junctions_hist_v2.R { tag } { file } ' , shell = True , check = True )
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output_files = glob .glob ("*_out.tsv" )
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output_files .sort ()# glob lacks reliable ordering, so impose your own if output order matters
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number_of_out_files = len (output_files )
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