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Have you checked the signal voltage? Think that you are using the analyzer with a level shifter, if you have it set to 5v and the peak signal of the clock is lower, it will not capture it properly being a sawtooth. If I recall it right the 48k clock had a 3v peak voltage, so most of the signal will be treated as a low value. You could try to set the analyzer that has the clock signal to use 3.3v as VREF instead of 5v, in theory the TXU0104 is versatile enough to handle voltages up to 6.5v even if the vref for the input is lower (never tried it, so is under your responsability :) ).

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@gusmanb
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Answer selected by derekfountain
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