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CHANGELOG.md

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## [2.1.9] - xxxx-xx-xx
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## [2.1.9] - 2025-11-14
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### Fixed
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- Fix `assign_transcript_to_cell` when the GeoDataFrame index name is already a column name (#346)
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### Added
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- Setting `sopa.settings.simplification_tolerance` to change the default shapely tolerance. For instance, set it to `0.1` for low simplification, or `0` for no simplification (#340)
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- Add an argument to load cells_boundaries and cells_table in `sopa.io.merscope` (`False` by default) (#346)
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- Do not overwrite the prior shape key in the transcript dataframe (useful if running multiple times `make_transcript_patches`)
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- Do not overwrite the prior shape key in the transcript dataframe (useful if running multiple times `make_transcript_patches`) (#354)
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## [2.1.8] - 2025-10-04
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pyproject.toml

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[project]
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name = "sopa"
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version = "2.1.8"
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version = "2.1.9"
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description = "Spatial-omics pipeline and analysis"
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authors = [{ name = "Quentin Blampey", email = "quentin.blampey@gmail.com" }]
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requires-python = ">=3.10"

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