gilda/pyproject.toml at master · gyorilab/gilda · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "gilda"
dynamic = ["version"]
description = "Grounding for biomedical entities with contextual disambiguation"
readme = {file = "README.md", content-type = "text/markdown"}
requires-python = ">=3.8"
license = {text = "BSD-2-Clause"}
authors = [
    {name = "Benjamin M. Gyori, Northeastern University", email = "b.gyori@northeastern.edu"}
]
keywords = ["nlp", "biology"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
]
dependencies = [
    "regex",
    "boto3",
    "adeft",
    "flask>=3.0,<4.0",
    "flask-restx>=1.3.0",
    "pystow>=0.1.10",
    "unidecode",
    "werkzeug"
]

[project.optional-dependencies]
test = [
    "pytest",
    "pytest-cov",
    "pandas"
]
terms = [
    "indra",
    "obonet"
]
benchmarks = [
    "pandas>=1.0",
    "requests",
    "tabulate",
    "tqdm",
    "click"
]
ui = [
    "flask-wtf",
    "flask-bootstrap"
]
docs = [
    "sphinx",
    "sphinx_autodoc_typehints",
    "sphinx_rtd_theme"
]

[project.urls]
Homepage = "https://github.com/gyorilab/gilda"
Documentation = "https://gilda.readthedocs.io"

[project.scripts]
gilda = "gilda.app:main"

[tool.setuptools]
packages = {find = {}}
include-package-data = true

[tool.setuptools.dynamic]
version = {attr = "gilda.__version__"}