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education/HADDOCK3/HADDOCK3-antibody-antigen/index.md

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@@ -284,54 +284,11 @@ If you are installing HADDOCK3 on your own system, check the instructions and re
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To obtain HADDOCK3 navigate to [its repository][haddock-repo], fill the
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registration form, and then follow the [installation instructions](https://www.bonvinlab.org/haddock3/INSTALL.html){:target="_blank"}.
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Provided you have a working Python version (3.9 to 3.12). you can install HADDOCK3 simply through
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#### Installing CNS
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The other required piece of software to run HADDOCK is its computational engine,
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CNS (Crystallography and NMR System –
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[https://cns-online.org](https://cns-online.org){:target="_blank"}). CNS is
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freely available for non-profit organizations. To get access to all
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features of HADDOCK you will need to compile CNS using the additional files
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provided in the HADDOCK distribution in the `extras/cns1.3` directory. Compilation of
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CNS might be non-trivial. Some guidance on installing CNS is provided on the online
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HADDOCK3 documentation page [here](https://github.com/haddocking/haddock3/blob/main/docs/CNS.md){:target="_blank"}.
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Once CNS has been properly compiled, you will have create a symbolic link or copy the executable to `haddock3/bin/cns`
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and make sure it is executable and functional. Try starting `cns` from the command line. You should see the following output:
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<details style="background-color:#DAE4E7">
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<summary>
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<i>View CNS prompt output</i><i class="material-icons">expand_more</i>
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</summary>
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<pre>
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============================================================
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| |
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| Crystallography & NMR System (CNS) |
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| CNSsolve |
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| |
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============================================================
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Version: 1.3 at patch level U
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Status: Special UU release with Rg, paramagnetic
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and Z-restraints (A. Bonvin, UU 2013)
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============================================================
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Written by: A.T.Brunger, P.D.Adams, G.M.Clore, W.L.DeLano,
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P.Gros, R.W.Grosse-Kunstleve,J.-S.Jiang,J.M.Krahn,
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J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read,
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L.M.Rice, G.F.Schroeder, T.Simonson, G.L.Warren.
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Copyright (c) 1997-2010 Yale University
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============================================================
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Running on machine: hostname unknown (Linux,64-bit)
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Program started by: l00902
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Program started at: 16:34:22 on 06-Dec-2023
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============================================================
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FFT3C: Using FFTPACK4.1
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CNSsolve>
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</pre>
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</details>
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<br>
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Exit the CNS command line by typing `stop`.
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```bash
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pip install haddock3
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```
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#### Auxiliary software

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