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Merge pull request #703 from haddocking/haddock24_protein_glycan
HADDOCK24 protein glycan tutorial
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education/HADDOCK24/HADDOCK24-protein-glycan/index.md

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education/HADDOCK24/index.md

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This tutorial demonstrate the modelling of protein-ligand complexes making use the shape-based modelling capabilities of HADDOCK.
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It is an advanced tutorial requiring a Linux shell, which, next to using the HADDOCK2.4 webserver, also uses open-source chemoinformatics
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toolkits such as [RDKit](https://www.rdkit.org/){:target="_blank"}.
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* [**HADDOCK2.4 basic protein-glycan tutorial**](/education/HADDOCK24/HADDOCK24-protein-glycan):
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This tutorial explains the modelling of protein-glycan complexes using the HADDOCK2.4 webserver and [PyMol](https://www.pymol.org){:target="_blank"} for visualisation/analysis. It is a basic, fully web-based tutorial requiring no Linux expertise.
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* [**HADDOCK2.4 ligand binding site tutorial**](/education/HADDOCK24/HADDOCK24-binding-sites):
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A tutorial demonstrating the use of HADDOCK in ab-initio mode to screen for potential ligand binding sites.

education/HADDOCK3/HADDOCK3-protein-glycan/index.md

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## Defining restraints for docking
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### Visualing the information about the bindind site
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### Visualising the information about the binding site
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Here we mimic a scenario where we have information about the glycan binding site on the protein, but no knowledge about which monosaccharide units are relevant for the binding. In this case (see Fig. 1), all the four beta-D-glucopyranose units are at the interface, although this might not be true in general, especially when longer glycans are considered.
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