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Added permanent Prot-ON result link
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  • education
    • HADDOCK24/HADDOCK24-antibody-antigen-basic
    • HADDOCK3/HADDOCK3-antibody-antigen

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education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md

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_Note_: For the purpose of our EMBO course pre-calculated runs are provided:
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* [_4G6M_matched_](http://proton.tools.ibg.edu.tr:8001/result/dae4ee4df0ec47e9a119fd512fdbfd98){:target="_blank"} (crystal structure)
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* [_cluster5_1_](http://proton.tools.ibg.edu.tr:8001/result/73cdda1fade6457faefa98af9e55b454){:target="_blank"} (top ranked cluster, l-RMSD 7.3Å)
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* [_cluster2_1_](http://proton.tools.ibg.edu.tr:8001/result/5ab290262ad340eaba0e6357b6ef46f2){:target="_blank"} (second best ranked cluster, l-RMSD 2.2Å)
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_Note_: A pre-calculated run for the 4G6M crystal structure is provided:
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* [_4G6M_matched_](http://proton.tools.ibg.edu.tr:8001/result/4G6M_matched_chain_A_EvoEF1){:target="_blank"} (crystal structure)
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education/HADDOCK3/HADDOCK3-antibody-antigen/index.md

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Here we will use PROT-ON to analyse the interface of our antibody-antigen complex. For that, we will use the provided matched reference structure (`4G6M-matched.pdb`) in which both chains of the antibody have the same chainID (A), which allows us to analyse all interface residues of the antibody at once.
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__Note:__ Pre-calculated PROT-ON results for this system can be accessed [here](http://proton.tools.ibg.edu.tr:8001/result/ebcdec31308c46acb82e8010f7f21df1){:target="_blank"}.
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__Note:__ Pre-calculated PROT-ON results for this system can be accessed [here](http://proton.tools.ibg.edu.tr:8001/result/4G6M_matched_chain_A_EvoEF1){:target="_blank"}.
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<a class="prompt prompt-info">
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Connect to the PROT-ON server page (link above) and fill in the following fields:

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