Added HADDOCK3 publication + logo to software page

Author: amjjbonvin

images/HADDOCK3-graffiti-logo.jpg

@@ -7,14 +7,14 @@ image:
   feature: pages/banner_software.jpg
 ---
 
-# <font color="RED">HADDOCK</font>
+# <img src="/images/HADDOCK3-graffiti-logo.jpg" width="10%">  <font color="RED">HADDOCK3</font>
 
 ***<font size="+2" color="RED">H</font>*****igh *<font size="+2" color="RED">A</font>*mbiguity *<font size="+2" color="RED">D</font>*riven biomolecular *<font size="+2" color="RED">DOCK</font>*ing**.
 
 
-![Structure + Binformatic/Biophysical Data => Complex](/images/HADDOCK3-logo.png)  
+![Structure + Binformatic/Biophysical Data => Complex](/images/HADDOCK3-logo.png) 
 
-_Version:_ 3.0 (first release May 2020)  
+_Version:_ 
 
 _Authors:_ Computational structural biology group, Utrecht University  
 
@@ -23,14 +23,15 @@ _Contact:_
 Bijvoet Center for Biomolecular Research<BR>
 Padualaan 8, 3584 CH Utrecht, the Netherlands<BR>
 Email: [email protected]<BR>
-Phone: +31-30-2533859
-Fax: +31-30-2537623
+Phone: +31-30-2532652
+
 
 **HADDOCK is one of the flagship software in the EU H2020 [BioExcel](https://www.bioexcel.eu) Center of Excellence for Biomolecular Research [<figure >
 <img src="/images/posts/Logo_bioexcel.png" width="200"> </figure> ](https://www.bioexcel.eu)**
 
+_Publication:_
 
-**ATTENTION: This new version is under heavy development and will change abruptly and without warning.**
+* M. Giulini#, V. Reys#, J.M.C. Teixeira, B. Jiménez-García, R.V. Honorato, A. Kravchenko, X. Xu, R. Versini, A. Engel, S. Verhoevenand **A.M.J.J. Bonvin**. [HADDOCK3: A modular and versatile platform for integrative modelling of biomolecular complexes](https://doi.org/10.1101/2025.04.30.651432). _BioRXiv._ 10.1101/2025.04.30.651432 (2025).
 
 
 * * *
@@ -45,6 +46,19 @@ However it is able to take full advantage of the ambiguous interaction restraint
 
 * * *
 
+## Manuals
+
+* [**HADDOCK3 documentation (for developers)**](https://www.bonvinlab.org/haddock3)
+  Documentation for HADDOCK3 including [installation instructions](https://www.bonvinlab.org/haddock3/INSTALL.html){:target="_blank"}.
+
+* [**HADDOCK3 user manual**](https://www.bonvinlab.org/haddock3-user-manual/)
+  User manual for HADDOCK3, with a comprehensive description of the software and its features, including a [Best Practices](https://www.bonvinlab.org/haddock3-user-manual/bpg.html){:target="_blank"} section and descriptions of several [HADDOCK docking scenarios](https://www.bonvinlab.org/haddock3-user-manual/docking_scenarios.html){:target="_blank"}.
+
+* [**HADDOCK restraints generation**](https://www.bonvinlab.org/haddock-restraints/home.html){:target="_blank"}:
+  A guide for the `haddock-restraints` tool allowing to generate various types of distance restraints for use in HADDOCK.
+
+* * *
+
 ## HADDOCK3 distribution download
 
 HADDOCK v3.0 can be freely downloaded by completing the following form (see our [privacy](https://wenmr.science.uu.nl/privacy){:target="_blank"} statement regarding the use of our portals):