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publications/index.md

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## 2025
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* M. Giulini#, X. Xu# and **A.M.J.J. Bonvin**. [Improved structural modelling of antibodies and their complexes with clustered diffusion ensembles](https://doi.org/10.1101/2025.02.24.639865). _BioRXiv._ 10.1101/2025.02.24.639865 (2025).
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* A. Basciu, M. Athar, H. Kurt, C. Neville, G. Malloci, F. Muredda, A. Bosin, P. Ruggerone, **A.M.J.J. Bonvin** and A.V. Vargiu. [Predicting binding events in very flexible, allosteric, multi-domain proteins](https://pubs.acs.org/doi/10.1021/acs.jcim.4c01810). _J. Chem. Inf. Mod._ Advanced Online Publication (2025).
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## 2024
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* V. Reys∗, Ma. Giulini∗, V. Cojocaru, A. Engel, X. Xu, J. Roel-Touris, C. Geng, F. Ambrosetti, B.
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Jimenez-Garcia, Z. Jandova, P.I. Koukos, C. van Noort, J.M. . Teixeira, S.C. van Keulen, M. Reau, R.V. Honorato and **A.M.J.J. Bonvin**. [Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55](http://doi.org/10.1002/prot.26789) _Proteins: Struc. Funct. & Bioinformatics_ Advanced Online Publication (2024).
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Jimenez-Garcia, Z. Jandova, P.I. Koukos, C. van Noort, J.M. . Teixeira, S.C. van Keulen, M. Reau, R.V. Honorato and **A.M.J.J. Bonvin**. [Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55](http://doi.org/10.1002/prot.26789). _Proteins: Struc. Funct. & Bioinformatics_ Advanced Online Publication (2024).
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* K. Devantier, T.L. Toft-Bertelsen, A. Prestel, V.M.S. Kjaer, C.a Sahin, M. Giulini, S. Louka, K. Spiess, A. Manandhar, K. Qvortrup, T. Ulven, B. Hjorth Bentzen, **A.M.J.J. Bonvin**, N. MacAulay, B.B. Kragelund and M.M. Rosenkilde. [The SH Protein of Mumps Virus is a Druggable Pentameric Viroporin](https://doi.org/10.1101/2024.08.09.60700). _BioRXiv._ 10.1101/2024.08.09.60700 (2024).
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