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Update index.md (#749)
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education/HADDOCK3/HADDOCK3-protein-peptide/index.md

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@@ -513,16 +513,16 @@ You can find information about the duration of the run at the bottom of the log
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For example, the `12_seletopclusts` directory contains the best models from top-ranked clusters. The clusters in that directory are numbered based on their rank, i.e. `cluster_1` refers to the best-ranked cluster. Information about the origin of these files can be found in that directory in the `seletopclusts.txt` file.
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### Overview docking run via visual statistics
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### Docking run overview via visual statistics
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The quickest way (though not the most detailed) to get an overview of a docking run is through the visual statistics provided by the caprieval module.
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Each caprieval step generates a summary table and multiple plots, bundled into a `report.html` file.
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These reports can be found in the corresponding analysis directories, e.g. `analysis/XX_caprieval_analysis/`.
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This is one of the reasons why the caprieval module is included after almost every step of the workflow.
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The content of `report.html` depends on where in the workflow the corresponding caprieval module is placed.
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If it follows an early step, the report describes unclustered models and details 10 top-ranked models (e.g. `analysis/13_caprieval_analysis/report.html`).
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If it follows clustering, the report summarizes clusters and their top models (e.g. `analysis/04_caprieval_analysis/report.html`).
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If it follows an early step, the report describes unclustered models and details 10 top-ranked models (e.g. `analysis/04_caprieval_analysis/report.html`).
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If it follows clustering, the report summarizes clusters and their top models (e.g. `analysis/13_caprieval_analysis/report.html`).
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To open `report.html` in a web-browser, [click here](plots/report.html){:target="_blank"}, or type:
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<a class="prompt prompt-cmd">

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