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---
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layout: news
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title: GANANA - EU-INDIA Partnership for Scientific High-Performance Computing
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date: 2025-09-23
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excerpt:
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tags: [HADDOCK, EuroHPC, collaboration, India, Utrecht University, Alexandre Bonvin, Docking]
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Our group is a partner in [GANANA](https://ganana.eu), a new EU project funded under HORIZON-EUROHPC-JU-2023-INCO-06. GANANA aims at establishing a long-term partnership collaboration between European HPC centers of excellence (including the BioExcel Center for Computational Biomolecular Research to which the Bonvin group belongs – [bioexcel.eu](https://bioexcel.eu)) and Indian institutions. GANANA’s objectives are to strengthen the links between EU and Indian research communities and develop selected leading software packages by extending their functionalities, optimising their HPC performance and deploying those on Indian computing resources, improving usability and data integration.
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Within GANANA the UU group is leading the life sciences activities that are centered around two European software: Gromacs for molecular dynamics (KTH Stockholm) and the HADDOCK integrative modelling software developed in Utrecht. Check the interview with Alexandre Bonvin:
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<center>
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<iframe width="560" height="315" src="https://www.youtube.com/embed/Z99ci8UlGo8?si=U1ICUl6R5w6kmECM&amp;start=1" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe>
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layout: news
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title: HADDOCK3 antibody-antigen Colab tutorial
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date: 2025-09-23
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excerpt:
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tags: [HADDOCK, Utrecht University, Alexandre Bonvin, Docking]
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We have released a Jyputer notebook running on Colab resources that demonstrates the use of HADDOCK3 for predicting the structure of an antibody-antigen complex using information about the hypervariable loops of the antibody and a loose definition of the epitope determined through NMR experiments.
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To access and launch the notebook visit:
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https://github.com/haddocking/haddock3/tree/main/notebooks
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<center>
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<img width="50%" align="center" src="/images/posts/HADDOCK3-antibody-antigen-tutorial.png">
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<br>
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Or launch it directly on Colab <a href="https://colab.research.google.com/github/haddocking/haddock3/blob/main/notebooks/HADDOCK3-antibody-antigen.ipynb"><b>here</b></a>!
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<br>
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Note that that a command line version of this tutorial is also available from our education pages at: [https://www.bonvinlab.org/education/HADDOCK3/](https://www.bonvinlab.org/education/HADDOCK3/)
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And a similar tutorial using instead our HADDOCK2.4 webserver is available from:
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[https://www.bonvinlab.org/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/](https://www.bonvinlab.org/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/)

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