[release] 0.2.135 (#14882)

# Security Assessment
This change has low security impact as:
- there are no functional changes herein
- all changes since the last release have an approved security impact
assessment.

---------

Co-authored-by: ehigham <8223952+ehigham@users.noreply.github.com>
Co-authored-by: Edmund Higham <edhigham@gmail.com>

Author: github-actions[bot]

hail/Makefile

@@ -11,7 +11,7 @@ $(error "git rev-parse --short=12 HEAD" failed to produce output)
 endif
 
 HAIL_MAJOR_MINOR_VERSION := 0.2
-HAIL_PATCH_VERSION := 134
+HAIL_PATCH_VERSION := 135
 HAIL_PIP_VERSION := $(HAIL_MAJOR_MINOR_VERSION).$(HAIL_PATCH_VERSION)
 HAIL_VERSION := $(HAIL_PIP_VERSION)-$(SHORT_REVISION)
 

hail/build.mill

@@ -14,7 +14,7 @@ import mill.util.Jvm
 
 object Settings {
   val hailMajorMinorVersion = "0.2"
-  val hailPatchVersion = "134"
+  val hailPatchVersion = "135"
 }
 
 object Deps {

hail/python/hail/docs/change_log.md

@@ -52,6 +52,24 @@ supports.
 policy. Their functionality or even existence may change without notice. Please contact us if you
 critically depend on experimental functionality.**
 
+## Version 0.2.135
+
+Released 2025-06-26
+
+### New Features
+
+- (hail#14923) add methods for (multivariate) hypergeometric distribution
+- (hail#14876) Progress bar for 'batch' backend now shows current cost
+- (hail#14829) 'batch' backend can now submit queries to an existing batch job
+
+### Bug Fixes
+
+- (hail#14905) Fix an error when importing PLINK files with very large numbers of variants
+- (hail#14913) Fix a bug that appears as a MatchError of class TDict
+- (hail#14907) Fix a bug that caused FileNotFound exceptions when converting between tables and spark dataframes.
+- (hail#14869) Fix a bug in the optimizer that incorrectly removed round-trip casts, eg float->int->float
+- (hail#14857) Fix a rare bug in the optimizer that produces invalid IR and most likely manifests as `assertion failed: type mismatchwhich`. This bug can only occur in certain cases at the very beginning of a hail session (right after hl.init).
+
 ## Version 0.2.134
 
 Released 2025-02-25

hail/python/hailtop/batch/docs/change_log.rst

@@ -15,6 +15,46 @@ versions. In particular, Hail officially supports:
 Change Log
 ==========
 
+**Version 0.2.135**
+
+- (`#14927 <https://github.com/hail-is/hail/pull/14927>`__)
+  Worker image and derived docker images upgraded to ubuntu 24.04.
+- (`#14925 <https://github.com/hail-is/hail/pull/14925>`__)
+  UI filtering improvements to user table
+- (`#14916 <https://github.com/hail-is/hail/pull/14916>`__)
+  Improved logging around JVM initialization failures
+- (`#14880 <https://github.com/hail-is/hail/pull/14880>`__)
+  Truncate job names when used as a directory name under /io
+- (`#14919 <https://github.com/hail-is/hail/pull/14919>`__)
+  Fixes a bug that made workers seem unresponsive and prevented jobs from
+  being marked complete.
+- (`#14912 <https://github.com/hail-is/hail/pull/14912>`__)
+  hailctl batch init now creates buckets in the default region with a 7 day
+  lifecycle policy instead of 30 day.
+- (`#14895 <https://github.com/hail-is/hail/pull/14895>`__)
+  Add support for multiple configuration profiles
+- (`#14848 <https://github.com/hail-is/hail/pull/14848>`__)
+  Use the default region when a user doesn't specify a region
+- (`#14908 <https://github.com/hail-is/hail/pull/14908>`__)
+  Adds default_region API endpoint
+- (`#14901 <https://github.com/hail-is/hail/pull/14901>`__)
+  Fixes bug where remove_tmpdir jobs were not run in the regions the user
+  specified.
+- (`#14810 <https://github.com/hail-is/hail/pull/14810>`__)
+  Adds SESSION_MAX_AGE_SECS to configure session timeout duration
+- (`#14849 <https://github.com/hail-is/hail/pull/14849>`__)
+  Temporary buckets are initialized with soft delete disabled.
+- (`#14876 <https://github.com/hail-is/hail/pull/14876>`__)
+  Batch progress bar now displays accrued cost
+- (`#14878 <https://github.com/hail-is/hail/pull/14878>`__)'
+  Login UI requires ToS acceptance.
+- (`#14844 <https://github.com/hail-is/hail/pull/14844>`__)
+  Adds support for n1 machines with T4 GPUs in GCP
+- (`#14833 <https://github.com/hail-is/hail/pull/14833>`__)
+  Various openapi documentation additions and fixes.
+- (`#14841 <https://github.com/hail-is/hail/pull/14841>`__)
+  Fixed a regression preventing hyphens in usernames.
+
 **Version 0.2.132**
 
 - (`#14576 <https://github.com/hail-is/hail/pull/14576>`__) Fixed bug where