Skip to content

Latest commit

 

History

History
57 lines (50 loc) · 12.3 KB

File metadata and controls

57 lines (50 loc) · 12.3 KB

Collections

Phenopacket store is a repository of GA4GH phenopackets{:target="_blank"}. that were mainly created using the Python library pyphetools{:target="_blank"}. All of the phenopackets were derived from publised case or cohort reports. We have created one page for each of the collections of phenopackets offered by this repository.

Cohort Comments
ESAM{:target="_blank"} 14 Phenopackets;Neurodevelopmental disorder with intracranial hemorrhage, seizures, and spasticity{:target="_blank"}
HMGCR{:target="_blank"} 15 Phenopackets;Muscular dystrophy, limb-girdle, autosomal recessive 28{:target="_blank"}
SMARCB1{:target="_blank"} 17 Phenopackets;Coffin-Siris syndrome 3{:target="_blank"}Rhabdoid tumor predisposition syndrome-1{:target="_blank"}severe intellectual disability and choroid plexus hyperplasia with resultant hydrocephalus{:target="_blank"}
LMNA{:target="_blank"} 127 Phenopackets;Cardiomyopathy, dilated, 1A{:target="_blank"}Hutchinson-Gilford progeria{:target="_blank"}LMNA-related congenital muscular dystrophy{:target="_blank"}Emery-Dreifuss muscular dystrophy 2, autosomal dominant{:target="_blank"}Lipodystrophy, familial partial, type 2{:target="_blank"}
11q_terminal_deletion{:target="_blank"} 69 Phenopackets;Jacobsen syndrome{:target="_blank"}
TBX5{:target="_blank"} 103 Phenopackets;Holt-Oram syndrome{:target="_blank"}
NUP54{:target="_blank"} 3 Phenopackets;Dystonia 37, early-onset, with striatal lesions{:target="_blank"}
WWOX{:target="_blank"} 9 Phenopackets;Developmental and epileptic encephalopathy 28{:target="_blank"}Spinocerebellar ataxia, autosomal recessive 12{:target="_blank"}
SRSF1{:target="_blank"} 15 Phenopackets;Developmental and epileptic encephalopathy 28{:target="_blank"}
ANKRD11{:target="_blank"} 328 Phenopackets;KBG syndrome{:target="_blank"}
single_cohorts{:target="_blank"} 60 Phenopackets;Neurodevelopmental disorder with hypotonia and speech delay, with or without seizures{:target="_blank"}Dystonia 22, adult-onset{:target="_blank"}Neurodevelopmental disorder with motor and language delay, ocular defects, and brain abnormalities{:target="_blank"}Birt-Hogg-Dube syndrome 2{:target="_blank"}Intellectual developmental disorder, autosomal dominant 73{:target="_blank"}Auriculocondylar syndrome 2B{:target="_blank"}Combined oxidative phosphorylation deficiency 58{:target="_blank"}
OFD1{:target="_blank"} 25 Phenopackets;Joubert syndrome 10{:target="_blank"}Simpson-Golabi-Behmel syndrome, type 2{:target="_blank"}Orofaciodigital syndrome I{:target="_blank"}
PPP2R1A{:target="_blank"} 60 Phenopackets;Houge-Janssen syndrome 2{:target="_blank"}
TRAF7{:target="_blank"} 45 Phenopackets;Cardiac, facial, and digital anomalies with developmental delay{:target="_blank"}
MPV17{:target="_blank"} 50 Phenopackets;Mitochondrial DNA depletion syndrome 6 (hepatocerebral type){:target="_blank"}
POT1{:target="_blank"} 4 Phenopackets;Pulmonary fibrosis and/or bone marrow failure syndrome, telomere-related, 8{:target="_blank"}
GLI3{:target="_blank"} 77 Phenopackets;Greig cephalopolysyndactyly syndrome{:target="_blank"}Pallister-Hall syndrome{:target="_blank"}Polydactyly, postaxial, types A1 and B{:target="_blank"}
DEPDC5{:target="_blank"} 8 Phenopackets;Developmental and epileptic encephalopathy 111{:target="_blank"}
SETD2{:target="_blank"} 29 Phenopackets;Intellectual developmental disorder, autosomal dominant 70{:target="_blank"}Luscan-Lumish syndrome{:target="_blank"}SETD2-Sotos-like{:target="_blank"}Rabin-Pappas syndrome{:target="_blank"}SETD2-Autism spectrum disorder{:target="_blank"}
SLC4A1{:target="_blank"} 33 Phenopackets;Distal renal tubular acidosis 1{:target="_blank"}Spherocytosis, type 4{:target="_blank"}Renal tubular acidosis, distal, with hemolytic anemia{:target="_blank"}Cryohydrocytosis{:target="_blank"}
ZSWIM6{:target="_blank"} 16 Phenopackets;Acromelic frontonasal dysostosis{:target="_blank"}Neurodevelopmental disorder with movement abnormalities, abnormal gait, and autistic features{:target="_blank"}
ANKH{:target="_blank"} 8 Phenopackets;Craniometaphyseal dysplasia{:target="_blank"}
KDM6B{:target="_blank"} 73 Phenopackets;Neurodevelopmental disorder with coarse facies and mild distal skeletal abnormalities{:target="_blank"}
SMARCC2{:target="_blank"} 60 Phenopackets;Coffin-Siris syndrome 8{:target="_blank"}
ATP13A2{:target="_blank"} 42 Phenopackets;Kufor-Rakeb syndrome{:target="_blank"}Spastic paraplegia 78, autosomal recessive{:target="_blank"}
MAPK8IP3{:target="_blank"} 22 Phenopackets;Neurodevelopmental disorder with or without variable brain abnormalities{:target="_blank"}
FBN1{:target="_blank"} 103 Phenopackets;Marfan syndrome{:target="_blank"}Acromicric dysplasia{:target="_blank"}Marfan lipodystrophy syndrome{:target="_blank"}Geleophysic dysplasia 2{:target="_blank"}Ectopia lentis, familial{:target="_blank"}Stiff skin syndrome{:target="_blank"}
SCO2{:target="_blank"} 72 Phenopackets;Mitochondrial complex IV deficiency, nuclear type 2{:target="_blank"}Myopia 6{:target="_blank"}
WFS1{:target="_blank"} 16 Phenopackets;Wolfram syndrome 1{:target="_blank"}Deafness, autosomal dominant 6{:target="_blank"}
TBX1{:target="_blank"} 5 Phenopackets;Conotruncal anomaly face syndrome{:target="_blank"}DiGeorge syndrome{:target="_blank"}
ISCA2{:target="_blank"} 16 Phenopackets;Mitochondrial DNA depletion syndrome 4{:target="_blank"}
SPTAN1{:target="_blank"} 14 Phenopackets;Neuronopathy, distal hereditary motor, autosomal dominant 11{:target="_blank"}
SLC45A2{:target="_blank"} 30 Phenopackets;Albinism, oculocutaneous, type IV{:target="_blank"}
ERI1{:target="_blank"} 10 Phenopackets;[ERI1-related disease](https://omim.org/entry/ 608739){:target="_blank"}
SUOX{:target="_blank"} 35 Phenopackets;Sulfite oxidase deficiency{:target="_blank"}
SON{:target="_blank"} 52 Phenopackets;ZTTK SYNDROME{:target="_blank"}
EZH1{:target="_blank"} 21 Phenopackets;EZH1-related neurodevelopmental disorder{:target="_blank"}
RPGRIP1{:target="_blank"} 229 Phenopackets;Leber congenital amaurosis 6{:target="_blank"}Cone-rod dystrophy 13{:target="_blank"}
CBLB{:target="_blank"} 3 Phenopackets;Autoimmune disease, multisystem, infantile-onset, 3{:target="_blank"}
SCN2A{:target="_blank"} 394 Phenopackets;Developmental and epileptic encephalopathy 11{:target="_blank"}autism spectrum disorder{:target="_blank"}epilepsy{:target="_blank"}Atypical SCN2A-related disease{:target="_blank"}Seizures, benign familial infantile, 3{:target="_blank"}
LIRICAL{:target="_blank"} 384 Phenopackets;
FBXL4{:target="_blank"} 30 Phenopackets;Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type){:target="_blank"}
LYN{:target="_blank"} 4 Phenopackets;Autoinflammatory disease, systemic, with vasculitis{:target="_blank"}
COL3A1{:target="_blank"} 39 Phenopackets;Ehlers-Danlos syndrome, vascular type{:target="_blank"}Polymicrogyria with or without vascular-type EDS{:target="_blank"}
STXBP1{:target="_blank"} 463 Phenopackets;NDD{:target="_blank"}West Syndrome{:target="_blank"}EOEE{:target="_blank"}Ohtahara Syndrome{:target="_blank"}Other DEE{:target="_blank"}Atypical Rett Syndrome{:target="_blank"}
PTPN11{:target="_blank"} 51 Phenopackets;LEOPARD syndrome 1{:target="_blank"}Noonan syndrome 1{:target="_blank"}Metachondromatosis{:target="_blank"}