ci: add --show-failed-logs to snakemake cmd for inspecting failed rules

cademirch · cademirch · commit 091315b9ed2c · 2026-01-26T10:46:30.000-08:00
diff --git a/tests/conftest.py b/tests/conftest.py
@@ -61,6 +61,7 @@ def run(self, target, configfile, samples=None, extra_args=None):
 
         cmd = [
             "snakemake",
+            "--show-failed-logs",
             "-s",
             str(self.snakefile),
             "--configfile",
