update software

Author: hasindu2008

docs/software.md

@@ -1,47 +1,52 @@
 # Software that supports S/BLOW5
 
+^ developed by us
+> a fork managed by us
+< contributed by us as a pull request
+* developed by others
+
 ## Basecalling
 
-- Guppy via [buttery-eel](https://github.com/Psy-Fer/buttery-eel/)
-- Dorado (through our [fork](https://github.com/hiruna72/slow5-dorado/releases))
-- Bonito (through our [fork](https://github.com/Psy-Fer/bonito))
-- [slorado](https://github.com/BonsonW/slorado)
-- [RODAN](https://github.com/biodlab/RODAN/pull/6)
-- [radian](https://github.com/comprna/radian/pull/5)
+- ^[buttery-eel](https://github.com/Psy-Fer/buttery-eel) for Guppy/Dorado server
+- >[slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)
+- >Bonito (through our [fork](https://github.com/Psy-Fer/bonito))
+- ^[slorado](https://github.com/BonsonW/slorado)
+- <[RODAN](https://github.com/biodlab/RODAN/pull/6)
+- <[radian](https://github.com/comprna/radian/pull/5)
 
 ## Methylation calling
 
-- Remora on Guppy with [buttery-eel](https://github.com/Psy-Fer/buttery-eel/)
-- Dorado (through our [fork](https://github.com/hiruna72/slow5-dorado/releases))
-- [f5c](https://github.com/hasindu2008/f5c/) (version 0.8 onwards)
-- [nanopolish](https://github.com/jts/nanopolish) (version 0.14.0 onwards)
+- ^[buttery-eel](https://github.com/Psy-Fer/buttery-eel/) for running remora models through Guppy/Dorado server
+- >[slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)
+- ^[f5c](https://github.com/hasindu2008/f5c/) (version 0.8 onwards)
+- <[nanopolish](https://github.com/jts/nanopolish) (version 0.14.0 onwards)
 
 ## raw signal mapping/alignment
 
-- [sigmap](https://github.com/haowenz/sigmap)
-- [OpenDBA](https://github.com/nodrogluap/OpenDBA)
-- [sigfish](https://github.com/beebdev/sigfish) and [HARU](https://github.com/beebdev/HARU)
-- [DeepSelectNet](https://github.com/AnjanaSenanayake/DeepSelectNet)
-- [SquiggleNet](https://github.com/welch-lab/SquiggleNet/pull/6)
-- [RawHash](https://github.com/CMU-SAFARI/RawHash/)
-- [UNCALLED4](https://github.com/skovaka/uncalled4)
+- <[sigmap](https://github.com/haowenz/sigmap)
+- <[OpenDBA](https://github.com/nodrogluap/OpenDBA)
+- ^[sigfish](https://github.com/beebdev/sigfish) and [HARU](https://github.com/beebdev/HARU)
+- ^[DeepSelectNet](https://github.com/AnjanaSenanayake/DeepSelectNet)
+- <[SquiggleNet](https://github.com/welch-lab/SquiggleNet/pull/6)
+- *[RawHash](https://github.com/CMU-SAFARI/RawHash/)
+- *[UNCALLED4](https://github.com/skovaka/uncalled4)
 
 ## raw signal manipulation
 
-- [sigtk](https://github.com/hasindu2008/sigtk)
-- [slow5tools](https://github.com/hasindu2008/slow5tools)
-- [slow5curl](https://github.com/BonsonW/slow5curl)
+- ^[sigtk](https://github.com/hasindu2008/sigtk)
+- ^[slow5tools](https://github.com/hasindu2008/slow5tools)
+- ^[slow5curl](https://github.com/BonsonW/slow5curl)
 
 ## conversion
 
-- [slow5tools](https://github.com/hasindu2008/slow5tools)
-- [blue-crab](https://github.com/Psy-Fer/blue-crab)
+- ^[slow5tools](https://github.com/hasindu2008/slow5tools)
+- ^[blue-crab](https://github.com/Psy-Fer/blue-crab)
 
 ## raw signal simulation
 
-- [squigulator](https://github.com/hasindu2008/squigulator/)
+- ^[squigulator](https://github.com/hasindu2008/squigulator/)
 
 ## raw signal visualisation
 
-- [squigualiser](https://github.com/hiruna72/squigualiser)
-- [nanoCEM](https://github.com/lrslab/nanoCEM)
+- ^[squigualiser](https://github.com/hiruna72/squigualiser)
+- *[nanoCEM](https://github.com/lrslab/nanoCEM)