bump to v0.5.0

Author: hasindu2008

README.md

@@ -18,7 +18,7 @@ SLOW5 specification: https://hasindu2008.github.io/slow5specs
 
 If you are a Linux user on x86_64 architecture and want to quickly try slow5tools out, download the compiled binaries from the [latest release](https://github.com/hasindu2008/slow5tools/releases). For example:
 ```sh
-VERSION=v0.4.0
+VERSION=v0.5.0
 wget "https://github.com/hasindu2008/slow5tools/releases/download/$VERSION/slow5tools-$VERSION-x86_64-linux-binaries.tar.gz" && tar xvf slow5tools-$VERSION-x86_64-linux-binaries.tar.gz && cd slow5tools-$VERSION/
 ./slow5tools
 ```
@@ -36,7 +36,7 @@ Quick example for Ubuntu :
 
 ```sh
 sudo apt-get install libhdf5-dev zlib1g-dev   #install HDF5 and zlib development libraries
-VERSION=v0.4.0
+VERSION=v0.5.0
 wget "https://github.com/hasindu2008/slow5tools/releases/download/$VERSION/slow5tools-$VERSION-release.tar.gz" && tar xvf slow5tools-$VERSION-release.tar.gz && cd slow5tools-$VERSION/
 ./configure
 make

docs/getting_started.md

@@ -13,7 +13,7 @@ SLOW5 specification: https://hasindu2008.github.io/slow5specs
 
 If you are a Linux user on x86_64 architecture and want to quickly try slow5tools out, download the compiled binaries from the [latest release](https://github.com/hasindu2008/slow5tools/releases). For example:
 ```sh
-VERSION=v0.4.0
+VERSION=v0.5.0
 wget "https://github.com/hasindu2008/slow5tools/releases/download/$VERSION/slow5tools-$VERSION-x86_64-linux-binaries.tar.gz" && tar xvf slow5tools-$VERSION-x86_64-linux-binaries.tar.gz && cd slow5tools-$VERSION/
 ./slow5tools
 ```
@@ -32,7 +32,7 @@ Quick example for Ubuntu:
 
 ```sh
 sudo apt-get install libhdf5-dev zlib1g-dev   #install HDF5 and zlib development libraries
-VERSION=v0.4.0
+VERSION=v0.5.0
 wget "https://github.com/hasindu2008/slow5tools/releases/download/$VERSION/slow5tools-$VERSION-release.tar.gz" && tar xvf slow5tools-$VERSION-release.tar.gz && cd slow5tools-$VERSION/
 ./configure
 make

slow5lib

@@ -1,7 +1,7 @@
 #ifndef CMD_H
 #define CMD_H
 
-#define SLOW5TOOLS_VERSION "0.4.0-dirty"
+#define SLOW5TOOLS_VERSION "0.5.0"
 
 #define DEFAULT_NUM_THREADS 8
 #define DEFAULT_NUM_PROCESSES 8
@@ -51,7 +51,7 @@
 //for f2s
 #define HELP_MSG_RETAIN_DIR_STRUCTURE \
     "        --retain                  retain the same directory structure in the converted output as the input (experimental)\n"
-//for f2s    
+//for f2s
 #define HELP_MSG_CONTINUE_F2S    \
     "    -a, --allow                   allow run id mismatches in a multi-fast5 file or in a single-fast5 directory\n" \
 //for merge