UQ_PhysiCell/pyproject.toml at main · heberlr/UQ_PhysiCell · GitHub

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# A hatchling based setup module.
#
# See:
# https://packaging.python.org/en/latest/
# https://packaging.python.org/en/latest/tutorials/packaging-projects/
# https://hatch.pypa.io/latest/
#
# releasing a next version on pypi:
# 0. change uq_physicell/VERSION.py  # increase version number in file - # If there is no changes in the core module DO NOT CREATE A NEW VERSION
# 1. Run bash doc/rebuild_docs.sh --clean # Update version on documentation
# 2. Commit and push the changes
# 3. Create a PR to development branch from your branch
# Development branch
# 4. Check if rebuild the documentation in : https://app.readthedocs.org/projects/uq-physicell/
# Prepate to update pypi version
# 5. rm -r dist # clean previous distribution
# 6. python -m build --sdist  # make source distribution
# 7. python -m build --wheel  # make binary distribution python wheel
# 8. python -m twine upload dist/* --verbose # publising python package
# 9. Change the badge of pypi on README.md https://badge.fury.io/py/uq-physicell.svg?updated=xxxxxxxx
# 10. Pull request from dev to main
# Main branch
# 11. Create the release tag (make sure the release tag is vx.x.x to match with GitHub link from documentation)


##### do not use conda env #######

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "uq_physicell"
dynamic = ["version"]

description = "Project to perform uncertainty quantification of PhysiCell models"
readme = "README.md"

requires-python = ">=3.10"

license = {file = "uq_physicell/LICENSE.md"}

authors = [
    {name = "Heber L. Rocha", email = "heberonly@gmail.com"}
]

keywords = [
    "Uncertainty Quantification",
    "PhysiCell",
    "Sensitivity Analysis",
    "Calibration",
    "Model selection",
]

dependencies = [
    "pcdl",
    "SALib",
]

[project.optional-dependencies]
docs = [
    "sphinx>=5.0",
    "sphinx-rtd-theme>=1.0",
    "myst-parser>=0.18",
    "sphinx-autobuild>=2021.3.14",
    "linkify-it-py>=2.0"
]
bo = [
    "torch",
    "botorch",
    "gpytorch"
]
abc = [
    "pyabc"
]

[project.scripts]
uq_physicell = "uq_physicell.gui.main_window:main"

[project.urls]
"Homepage" = "https://github.com/heberlr/UQ_PhysiCell"

[tool.hatch.version]
path = "uq_physicell/VERSION.py"

[tool.hatch.build.targets.sdist]
include = [
    "/man",
    "/uq_physicell",
    "/examples",
]

[tool.hatch.build.targets.wheel]
include = [
    "/uq_physicell",
]