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| 1 | +/* |
| 2 | +############################################################################# |
| 3 | +# If you use BioFVM in your project, please cite BioFVM and the version # |
| 4 | +# number, such as below: # |
| 5 | +# # |
| 6 | +# We solved the diffusion equations using BioFVM (Version 1.1.7) [1] # |
| 7 | +# # |
| 8 | +# [1] A. Ghaffarizadeh, S.H. Friedman, and P. Macklin, BioFVM: an efficient # |
| 9 | +# parallelized diffusive transport solver for 3-D biological simulations,# |
| 10 | +# Bioinformatics 32(8): 1256-8, 2016. DOI: 10.1093/bioinformatics/btv730 # |
| 11 | +# # |
| 12 | +############################################################################# |
| 13 | +# # |
| 14 | +# BSD 3-Clause License (see https://opensource.org/licenses/BSD-3-Clause) # |
| 15 | +# # |
| 16 | +# Copyright (c) 2015-2017, Paul Macklin and the BioFVM Project # |
| 17 | +# All rights reserved. # |
| 18 | +# # |
| 19 | +# Redistribution and use in source and binary forms, with or without # |
| 20 | +# modification, are permitted provided that the following conditions are # |
| 21 | +# met: # |
| 22 | +# # |
| 23 | +# 1. Redistributions of source code must retain the above copyright notice, # |
| 24 | +# this list of conditions and the following disclaimer. # |
| 25 | +# # |
| 26 | +# 2. Redistributions in binary form must reproduce the above copyright # |
| 27 | +# notice, this list of conditions and the following disclaimer in the # |
| 28 | +# documentation and/or other materials provided with the distribution. # |
| 29 | +# # |
| 30 | +# 3. Neither the name of the copyright holder nor the names of its # |
| 31 | +# contributors may be used to endorse or promote products derived from this # |
| 32 | +# software without specific prior written permission. # |
| 33 | +# # |
| 34 | +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS # |
| 35 | +# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED # |
| 36 | +# TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A # |
| 37 | +# PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER # |
| 38 | +# OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, # |
| 39 | +# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, # |
| 40 | +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR # |
| 41 | +# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF # |
| 42 | +# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING # |
| 43 | +# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS # |
| 44 | +# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # |
| 45 | +# # |
| 46 | +############################################################################# |
| 47 | +*/ |
| 48 | + |
| 49 | +#ifndef __BioFVM_h__ |
| 50 | +#define __BioFVM_h__ |
| 51 | + |
| 52 | +#include <iostream> |
| 53 | +#include <fstream> |
| 54 | + |
| 55 | +namespace BioFVM{ |
| 56 | +extern std::string BioFVM_Version; |
| 57 | +extern std::string BioFVM_URL; |
| 58 | +}; |
| 59 | + |
| 60 | +#include "BioFVM_utilities.h" |
| 61 | +#include "BioFVM_vector.h" |
| 62 | +#include "BioFVM_vector.h" |
| 63 | +#include "BioFVM_mesh.h" |
| 64 | +#include "BioFVM_microenvironment.h" |
| 65 | +#include "BioFVM_solvers.h" |
| 66 | +#include "BioFVM_basic_agent.h" |
| 67 | + |
| 68 | + |
| 69 | +#endif |
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