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# claude-code-reference.yaml
# Quick lookup for Claude Code - comprehensive index
# Source: guide/ultimate-guide.md
# Purpose: Condensed index for LLMs to quickly answer user questions about Claude Code
version: "3.23.4"
updated: "2026-02-09"
# ════════════════════════════════════════════════════════════════
# DEEP DIVE - Line numbers in guide/ultimate-guide.md
# Usage: Read file at line N for detailed documentation on topic
# For architecture internals, see guide/architecture.md
# ════════════════════════════════════════════════════════════════
deep_dive:
# AI-Assisted Development Workflows (from MetalBear/arXiv research)
exploration_workflow: "guide/workflows/exploration-workflow.md"
script_generation: "guide/workflows/iterative-refinement.md:192"
anti_anchoring_prompts: "examples/semantic-anchors/anchor-catalog.md:240"
session_limits: "guide/architecture.md:272"
claudemd_sizing: 3054
scope_success_rates: "guide/adoption-approaches.md:20"
# Claude Code Releases
claude_code_releases: "guide/claude-code-releases.md"
claude_code_releases_yaml: "machine-readable/claude-code-releases.yaml"
# Code Review Automation (Pat Cullen, Jan 2026)
review_pr_advanced: "examples/commands/review-pr.md:81"
review_anti_hallucination: "examples/agents/code-reviewer.md:75"
review_auto_fix_loop: "guide/workflows/iterative-refinement.md:347"
# Known Issues & Critical Bugs (verified community reports)
known_issues: "guide/known-issues.md"
known_issues_github_bug: "guide/known-issues.md:16" # GitHub auto-creation bug
known_issues_token_consumption: "guide/known-issues.md:136" # Excessive token usage
known_issues_model_quality_aug2025: "guide/known-issues.md:231" # Resolved: Aug 2025 degradation
# Template Installation
install_templates_script: "scripts/install-templates.sh"
# Session management
session_search: "guide/observability.md:29"
session_search_script: "examples/scripts/session-search.sh"
session_resume_limitations: "guide/observability.md:117"
session_cross_folder_migration: "guide/observability.md:117"
session_migration_manual: "guide/observability.md:135"
session_migration_risks: "guide/observability.md:157"
session_migration_community_tool: "guide/observability.md:175"
session_migration_issue: "https://github.com/anthropics/claude-code/issues/1516"
session_migration_weller_skill: "https://github.com/jimweller/dotfiles/tree/main/dotfiles/claude-code/skills/claude-migrate-session"
# Cost optimization - Local execution bridge
bridge_script: "examples/scripts/bridge.py"
bridge_schema: "examples/scripts/bridge-plan-schema.json"
bridge_guide: "guide/ultimate-guide.md:14079"
# Cost optimization - RTK (Rust Token Killer)
rtk_upstream: "https://github.com/pszymkowiak/rtk"
rtk_fork_extended: "https://github.com/FlorianBruniaux/rtk"
rtk_evaluation: "docs/resource-evaluations/rtk-evaluation.md"
rtk_guide: "guide/ultimate-guide.md:11084"
rtk_third_party: "guide/third-party-tools.md:86"
rtk_claude_md: "examples/claude-md/rtk-optimized.md"
rtk_skill: "examples/skills/rtk-optimizer/SKILL.md"
rtk_hook: "examples/hooks/bash/rtk-auto-wrapper.sh"
rtk_pr_proposals: "claudedocs/rtk-pr-proposals.md"
rtk_purpose: "Command output filtering before LLM context (72.6% avg reduction)"
rtk_version_tested: "v0.2.0"
rtk_score: "4/5"
rtk_installation: "Binary download (GitHub releases)"
# PDF Generation
pdf_generation: "guide/workflows/pdf-generation.md"
pdf_generator_skill: "examples/skills/pdf-generator.md"
whitepapers_example: "whitepapers/README.md" # Local example only (gitignored)
# Learning with AI (guide/learning-with-ai.md)
learning_quick_check: "guide/learning-with-ai.md:31"
learning_uval_protocol: "guide/learning-with-ai.md:127"
learning_claude_config: "guide/learning-with-ai.md:353"
learning_breaking_dependency: "guide/learning-with-ai.md:470"
learning_embracing_ai: "guide/learning-with-ai.md:518"
learning_30day_plan: "guide/learning-with-ai.md:710"
learning_red_flags: "guide/learning-with-ai.md:770"
learning_mode_template: "examples/claude-md/learning-mode.md"
learn_quiz_command: "examples/commands/learn/quiz.md"
learn_teach_command: "examples/commands/learn/teach.md"
learn_alternatives_command: "examples/commands/learn/alternatives.md"
learning_capture_hook: "examples/hooks/bash/learning-capture.sh"
# Anti-patterns
vibe_coding_trap: "guide/learning-with-ai.md:81"
vibe_coding_context_overload: 8746
vibe_coding_context_overload_source: "Jens Rusitschka, 'Vibe Coding, Level 2' (Jan 2026)"
vibe_coding_phased_strategy: 8760
# AI Traceability & Attribution (guide/ai-traceability.md) - Added 2026-01-24
ai_traceability_guide: "guide/ai-traceability.md"
ai_traceability_why: "guide/ai-traceability.md:25"
ai_traceability_disclosure_spectrum: "guide/ai-traceability.md:63"
ai_traceability_co_authored_by: "guide/ai-traceability.md:89"
ai_traceability_assisted_by: "guide/ai-traceability.md:109"
ai_traceability_git_ai: "guide/ai-traceability.md:262"
ai_traceability_llvm_policy: "guide/ai-traceability.md:169"
ai_traceability_ghostty_policy: "guide/ai-traceability.md:203"
ai_traceability_fedora_policy: "guide/ai-traceability.md:227"
ai_traceability_promptpwnd: "guide/ai-traceability.md:342"
ai_traceability_implementation: "guide/ai-traceability.md:392"
ai_traceability_templates: "guide/ai-traceability.md:440"
# AI Disclosure Templates
ai_disclosure_contributing: "examples/config/CONTRIBUTING-ai-disclosure.md"
ai_disclosure_pr_template: "examples/config/PULL_REQUEST_TEMPLATE-ai.md"
# TTS Integration (Agent Vibes) - Added 2026-01-22
tts_integration_guide: "examples/integrations/agent-vibes/README.md"
tts_installation: "examples/integrations/agent-vibes/installation.md"
tts_voice_catalog: "examples/integrations/agent-vibes/voice-catalog.md"
tts_troubleshooting: "examples/integrations/agent-vibes/troubleshooting.md"
tts_workflow: "guide/workflows/tts-setup.md"
tts_ai_ecosystem: "guide/ai-ecosystem.md:507"
tts_hook_example: "examples/hooks/bash/tts-selective.sh"
tts_claude_md_template: "examples/claude-md/tts-enabled.md"
# Sandbox Isolation for Coding Agents (guide/sandbox-isolation.md) - Added 2026-01-31
sandbox_isolation_guide: "guide/sandbox-isolation.md"
sandbox_isolation_decision_tree: "guide/sandbox-isolation.md:40"
sandbox_docker_sandboxes: "guide/sandbox-isolation.md:61"
sandbox_docker_network: "guide/sandbox-isolation.md:121"
sandbox_docker_templates: "guide/sandbox-isolation.md:165"
sandbox_docker_docs: "https://docs.docker.com/ai/sandboxes/"
sandbox_docker_claude_config: "https://docs.docker.com/ai/sandboxes/claude-code/"
sandbox_docker_network_docs: "https://docs.docker.com/ai/sandboxes/network-policies/"
sandbox_docker_templates_docs: "https://docs.docker.com/ai/sandboxes/templates/"
sandbox_flyio_sprites: "https://sprites.dev"
sandbox_cloudflare_sdk: "https://developers.cloudflare.com/sandbox/tutorials/claude-code/"
sandbox_vercel: "https://vercel.com/docs/vercel-sandbox/"
sandbox_e2b: "https://e2b.dev"
sandbox_native_cc: "guide/architecture.md:579"
# Native Claude Code Sandbox (Official docs, v2.1.0+) - Added 2026-02-02
sandbox_native_guide: "guide/sandbox-native.md"
sandbox_native_why: "guide/sandbox-native.md:47" # Why Native Sandboxing
sandbox_native_os_primitives: "guide/sandbox-native.md:68" # Seatbelt vs bubblewrap
sandbox_native_filesystem: "guide/sandbox-native.md:172" # Filesystem isolation
sandbox_native_network: "guide/sandbox-native.md:216" # Network proxy architecture
sandbox_native_modes: "guide/sandbox-native.md:296" # Auto-allow vs Regular
sandbox_native_escape_hatch: "guide/sandbox-native.md:336" # dangerouslyDisableSandbox
sandbox_native_security_limits: "guide/sandbox-native.md:391" # Domain fronting, Unix sockets
sandbox_native_opensource: "guide/sandbox-native.md:476" # Open-source runtime
sandbox_native_platforms: "guide/sandbox-native.md:500" # Platform support
sandbox_native_decision_tree: "guide/sandbox-native.md:512" # Native vs Docker
sandbox_native_config_examples: "guide/sandbox-native.md:559" # Configuration examples
sandbox_native_best_practices: "guide/sandbox-native.md:646" # Best practices
sandbox_native_troubleshooting: "guide/sandbox-native.md:659" # Troubleshooting
sandbox_runtime_oss: "https://github.com/anthropic-experimental/sandbox-runtime"
sandbox_runtime_npm: "https://www.npmjs.com/package/@anthropic-ai/sandbox-runtime"
sandbox_official_docs: "https://code.claude.com/docs/en/sandboxing"
sandbox_comparison_native_docker: "guide/sandbox-isolation.md:61" # Section 4 Native CC
sandbox_native_evaluation: "docs/resource-evaluations/native-sandbox-official-docs.md"
sandbox_native_score: "5/5"
# Templates (Added 2026-02-02)
sandbox_native_config_template: "examples/config/sandbox-native.json"
sandbox_status_command: "examples/commands/sandbox-status.md"
sandbox_validation_hook: "examples/hooks/bash/sandbox-validation.sh"
# Docker Sandboxes (existing)
sandbox_evaluation: "docs/resource-evaluations/docker-sandboxes-isolation.md"
sandbox_safe_autonomy: "guide/sandbox-isolation.md:486" # Updated line number (was 320)
sandbox_anti_patterns: "guide/sandbox-isolation.md:538" # Updated line number (was 372)
sandbox_comparison_matrix: "guide/sandbox-isolation.md:469" # Updated line number (was 306)
sandbox_score: "4/5"
# Third-Party Tools (guide/third-party-tools.md) - Added 2026-02-01
third_party_tools_guide: "guide/third-party-tools.md"
third_party_tools_cost_tracking: "guide/third-party-tools.md:42"
third_party_tools_rtk: "guide/third-party-tools.md:86"
third_party_tools_session_mgmt: "guide/third-party-tools.md:105"
third_party_tools_config_mgmt: "guide/third-party-tools.md:132"
third_party_tools_alternative_uis: "guide/third-party-tools.md:170"
third_party_tools_known_gaps: "guide/third-party-tools.md:259"
third_party_tools_recommendations: "guide/third-party-tools.md:274"
third_party_ccusage: "https://www.npmjs.com/package/ccusage"
third_party_ccusage_site: "https://ccusage.com"
third_party_ccburn: "https://github.com/JuanjoFuchs/ccburn"
third_party_claude_code_viewer: "https://www.npmjs.com/package/@kimuson/claude-code-viewer"
third_party_claude_code_config: "https://github.com/joeyism/claude-code-config"
third_party_aiblueprint: "https://github.com/Melvynx/aiblueprint"
third_party_claude_chic: "https://pypi.org/project/claudechic/"
third_party_toad: "https://github.com/batrachianai/toad"
third_party_conductor: "https://docs.conductor.build"
# Configuration Management & Backup (Added 2026-02-02)
config_management_guide: "guide/ultimate-guide.md:4085" # Section 3.23.4
config_hierarchy: "guide/ultimate-guide.md:4095" # Global → Project → Local precedence
config_git_strategy_project: "guide/ultimate-guide.md:4110" # What to commit in .claude/
config_git_strategy_global: "guide/ultimate-guide.md:4133" # Version control ~/.claude/
config_backup_strategies: "guide/ultimate-guide.md:4171" # Git, cloud sync, cron
config_multi_machine_sync: "guide/ultimate-guide.md:4183" # Laptop + desktop workflows
config_security_considerations: "guide/ultimate-guide.md:4219" # Never commit secrets
config_disaster_recovery: "guide/ultimate-guide.md:4233" # Restore from backup
config_community_solutions: "guide/ultimate-guide.md:4249" # brianlovin + Ratinaud
config_github_issue: "https://github.com/anthropics/claude-code/issues/16204" # Migration guidance request
config_brianlovin_repo: "https://github.com/brianlovin/claude-config" # Community example with sync.sh
config_ratinaud_approach: "https://www.linkedin.com/posts/martinratinaud_claudecode-devtools-buildinpublic-activity-7424055660247629824-hBsL" # 504 sessions tested
config_ratinaud_evaluation: "docs/resource-evaluations/ratinaud-config-management-evaluation.md" # Full evaluation
# MCP Secrets Management (Added 2026-02-02)
mcp_secrets_management: "guide/ultimate-guide.md:8113" # Section 8.3.1
mcp_secrets_principles: "guide/ultimate-guide.md:8121" # Security principles
mcp_secrets_os_keychain: "guide/ultimate-guide.md:8141" # Approach 1: OS Keychain
mcp_secrets_env_file: "guide/ultimate-guide.md:8197" # Approach 2: .env + .gitignore
mcp_secrets_vaults: "guide/ultimate-guide.md:8273" # Approach 3: HashiCorp Vault, AWS, 1Password
mcp_secrets_rotation: "guide/ultimate-guide.md:8325" # Rotation workflow
mcp_secrets_pre_commit: "guide/ultimate-guide.md:8363" # Secret detection hook
mcp_secrets_verification: "guide/ultimate-guide.md:8386" # Verification checklist
mcp_secrets_best_practices: "guide/ultimate-guide.md:8406" # Summary table
# Templates & Scripts (Configuration Management)
sync_claude_config_script: "examples/scripts/sync-claude-config.sh" # Full automation script
pre_commit_secrets_hook: "examples/hooks/bash/pre-commit-secrets.sh" # Git hook for secret detection
settings_local_example: "examples/config/settings.local.json.example" # Machine-specific overrides template
# Visual Reference (ASCII diagrams)
visual_reference: "guide/visual-reference.md"
# Architecture internals (guide/architecture.md)
architecture_visual_overview: "guide/architecture.md:41"
architecture_visual_source: "https://www.linkedin.com/posts/mohamed-ali-ben-salem-2b777b9a_en-ce-moment-je-vois-passer-des-posts-du-activity-7420592149110362112-eY5a"
architecture_master_loop: "guide/architecture.md:72"
architecture_tools: "guide/architecture.md:213"
architecture_context: "guide/architecture.md:306"
architecture_subagents: "guide/architecture.md:444"
architecture_permissions: "guide/architecture.md:514"
architecture_mcp: "guide/architecture.md:719"
architecture_mcp_visual: "guide/images/mcp-architecture-diagram.svg"
architecture_philosophy: "guide/architecture.md:1177"
# System Prompts (Official Sources) - Added 2026-01-26
system_prompts_official: "https://platform.claude.com/docs/en/release-notes/system-prompts"
system_prompts_willison_analysis: "https://simonwillison.net/2025/May/25/claude-4-system-prompt/"
system_prompts_prompthub: "https://www.prompthub.us/blog/an-analysis-of-the-claude-4-system-prompt"
system_prompts_architecture: "guide/architecture.md:354"
# MCP Apps Extension (SEP-1865) - Added 2026-01-27
mcp_apps_architecture: "guide/architecture.md:795"
mcp_apps_evolution: "guide/ultimate-guide.md:6509"
mcp_apps_spec: "https://github.com/modelcontextprotocol/ext-apps"
mcp_apps_blog_mcp: "https://blog.modelcontextprotocol.io/posts/2026-01-26-mcp-apps/"
mcp_apps_blog_claude: "https://claude.com/blog/interactive-tools-in-claude"
mcp_apps_sdk: "https://www.npmjs.com/package/@modelcontextprotocol/ext-apps"
mcp_apps_announcement_date: "2026-01-26"
mcp_apps_cli_relevance: "Indirect (ecosystem understanding, MCP server dev, hybrid workflows)"
# Main guide (guide/ultimate-guide.md) - Updated 2026-01-27
installation: 196
first_workflow: 277
essential_commands: 326
trust_calibration: 1039
working_with_images: 422
wireframing_tools: 492
figma_mcp: 529
image_optimization: 594
permission_modes: 760
interaction_loop: 1299
context_management: 1335
context_triage: 1448
session_vs_memory: 1481
fresh_context_pattern: 1525
subscription_limits: 1933
subscription_token_budgets: 1948
subscription_opus_ratio: 1946
subscription_monitoring: 1985
plan_mode: 2100
rewind: 2278
mental_model: 2360
xml_prompting: 2419
prompting_provocation: 3029
prompting_provocation_source: "https://paddo.dev/blog/claude-code-team-tips/"
semantic_anchors: 2904
semantic_anchors_catalog: "examples/semantic-anchors/anchor-catalog.md"
memory_files: 3160
# Auto-Memories (v2.1.32+) - Added 2026-02-09
auto_memories: 3986
auto_memories_vs_claudemd: 3999
# Fast Mode (v2.1.36+) - Added 2026-02-09
fast_mode_command: 16279 # /fast in commands table
fast_mode_api: 10051 # API breaking changes section
fast_mode_pricing: 1722 # Pricing table
fast_mode_behavior: "2.5x faster, 6x price, same Opus 4.6 model"
# Debug Command (v2.1.30+) - Added 2026-02-09
debug_command: 16280 # /debug in commands table
debug_purpose: "Systematic troubleshooting and error investigation"
# Opus 4.6 Features (Feb 2026) - Added 2026-02-09
opus_4_6_adaptive_thinking: 9911
opus_4_6_effort_parameter: 9985
opus_4_6_pricing: 1722
opus_4_6_api_breaking_changes: 10044
opus_4_6_assistant_prefill_removed: 10047
# Summarize from Here (v2.1.32+) - Added 2026-02-09
summarize_from_here: 1470 # Context recovery strategies
# Agent Teams Hook Events (v2.1.32+) - Added 2026-02-09
hook_teammate_idle: 6972
hook_task_completed: 6973
# Agent Memory Field (v2.1.32+) - Added 2026-02-09
agent_memory_frontmatter: 4849
# Xcode Integration (Feb 2026) - Added 2026-02-09
xcode_integration: 10834
claude_agent_sdk: 10845
# Task Management System (v2.1.16+) - Added 2026-01-26
task_management_system: 3127
task_management_comparison: 3140
tasks_api_overview: 3150
tasks_api_tools: 3160
tasks_api_capabilities: 3170
tasks_api_configuration: 3180
tasks_api_schema: 3195
tasks_api_when_to_use: 3210
tasks_api_limitations: 3195
tasks_api_field_visibility: "TaskList: id/subject/status/owner/blockedBy only. TaskGet: all fields."
tasks_api_cost_overhead: "Reviewing N task descriptions = 1 + N API calls"
tasks_api_workarounds: 3210
todowrite_legacy: 3260
todowrite_when_to_use: 3230
todowrite_migration_flag: 3240
task_best_practices: 3250
task_hierarchy_design: 3252
task_dependency_management: 3256
task_status_transitions: 3260
task_metadata_conventions: 3264
task_complete_workflow: 3270
task_sources: 3280
# Task Management Workflow (guide/workflows/task-management.md)
workflows_task_management: "guide/workflows/task-management.md"
task_workflow_overview: "guide/workflows/task-management.md:15"
task_workflow_planning: "guide/workflows/task-management.md:48"
task_workflow_execution: "guide/workflows/task-management.md:160"
task_workflow_session_mgmt: "guide/workflows/task-management.md:260"
task_workflow_tdd_integration: "guide/workflows/task-management.md:370"
task_workflow_plan_integration: "guide/workflows/task-management.md:440"
task_workflow_migration: "guide/workflows/task-management.md:510"
task_workflow_patterns: "guide/workflows/task-management.md:620"
task_workflow_troubleshooting: "guide/workflows/task-management.md:740"
task_workflow_advanced: "guide/workflows/task-management.md:820"
claude_folder: 3413
settings: 3464
precedence_rules: 3686
agents: 3827
agent_template: 3900
agent_examples: 4038
skills: 4420
skill_template: 4540
skill_examples: 4608
design_patterns_skill: 4799
design_patterns_skill_location: "examples/skills/design-patterns/"
design_patterns_skill_modes: "Detection, Suggestion, Evaluation"
design_patterns_skill_patterns: "23 GoF patterns (Creational 5, Structural 7, Behavioral 11)"
design_patterns_skill_stacks: "React, Angular, NestJS, Vue, Express, RxJS, Redux, ORMs"
community_skills_cybersec: 4947
community_skills_iac: 5030
# Automatic skill generation (meta-skill)
claudeception: "https://github.com/blader/Claudeception"
claudeception_guide: 5095
# Skill Lifecycle: Automatic improvement (added 2026-01-24)
skill_lifecycle: 5118
claude_reflect_system: 5161
claude_reflect_system_repo: "https://github.com/haddock-development/claude-reflect-system"
claude_reflect_system_agent_skills: "https://agent-skills.md/skills/haddock-development/claude-reflect-system/reflect"
skill_improvement_pattern: 5161
skill_improvement_how_it_works: 5169
skill_improvement_safety: 5188
skill_improvement_security_warnings: 5237
skill_improvement_comparison: 5263
skill_improvement_workflow: 5275
# Agent Skills Open Standard (added 2026-02-01)
agentskills_spec: "https://agentskills.io"
agentskills_spec_repo: "https://github.com/agentskills/agentskills"
agentskills_spec_stars: "8.2K"
agentskills_platforms: "26+ (Claude Code, Cursor, VS Code, GitHub, Codex, Gemini CLI, Goose, Roo Code, Spring AI, Databricks...)"
agentskills_ref_cli: "https://github.com/agentskills/agentskills/tree/main/skills-ref"
agentskills_ref_cli_usage: "skills-ref validate <path> | skills-ref to-prompt <path>"
anthropics_skills_repo: "https://github.com/anthropics/skills"
anthropics_skills_stars: "60K+"
anthropics_skills_categories: "Documents (docx/pdf/pptx/xlsx), Creative & Design, Development, Enterprise"
anthropics_skills_install: "/plugin marketplace add anthropics/skills"
anthropics_plugins_official_repo: "https://github.com/anthropics/claude-plugins-official"
anthropics_plugins_official_installs: "3.1K"
anthropics_plugins_official_skills: "claude-md-improver, claude-automation-recommender, playground, plugin dev meta-skills"
anthropics_plugins_official_install: "npx add-skill anthropics/claude-plugins-official"
agentskills_threat_model: "https://safedep.io/agent-skills-threat-model"
agentskills_threat_model_finding: "8-14% of public skills have vulnerabilities (prompt injection, data exfiltration, privilege escalation)"
agentskills_blog: "https://anthropic.com/engineering/equipping-agents-for-the-real-world-with-agent-skills"
agentskills_guide_section: "guide/ultimate-guide.md:5180"
agentskills_evaluation: "docs/resource-evaluations/agentskills-io-specification.md"
agentskills_score: "4/5"
# Skills Marketplace (added 2026-01-23)
skills_marketplace: 5172
skills_marketplace_url: "https://skills.sh/"
skills_marketplace_github: "https://github.com/vercel-labs/agent-skills"
skills_marketplace_install: "npx add-skill <owner/repo>"
skills_marketplace_top_skills:
- "vercel-react-best-practices: 35K+ installs"
- "web-design-guidelines: 26.6K installs"
- "supabase-postgres-best-practices: 1K+ installs"
- "better-auth-best-practices: 2K+ installs"
- "test-driven-development: 721 installs"
skills_marketplace_status: "Community (Vercel Labs), launched Jan 21, 2026"
skills_marketplace_changelog: "https://vercel.com/changelog/introducing-skills-the-open-agent-skills-ecosystem"
# Plugin System & Community Marketplaces (updated 2026-01-24)
plugins_system: 6863
plugins_commands: 6876
plugins_marketplace: 6890
plugins_community_marketplaces: 7246 # New section with ecosystem stats
plugins_recommended: "examples/plugins/"
plugins_se_cove: "examples/plugins/se-cove.md"
plugins_official_docs: "https://code.claude.com/docs/en/plugins"
plugins_official_reference: "https://code.claude.com/docs/en/plugins-reference"
plugins_official_marketplaces: "https://code.claude.com/docs/en/plugin-marketplaces"
# Community plugin resources
plugins_wshobson_agents:
url: "https://github.com/wshobson/agents"
stats: "67 plugins, 99 agents, 107 skills"
updated: "2026-01-24"
plugins_registry_claude_plugins_dev:
url: "https://claude-plugins.dev"
stats: "11,989 plugins, 63,065 skills indexed"
plugins_registry_claudemarketplaces:
url: "https://claudemarketplaces.com"
purpose: "Auto-scan GitHub for .claude-plugin/marketplace.json"
plugins_popular:
- "Context7: ~72k installs (library docs lookup)"
- "Ralph Wiggum: ~57k installs (code review)"
- "Figma MCP: ~18k installs (design-to-code)"
- "Linear MCP: ~9.5k installs (issue tracking)"
plugins_awesome_list: "https://github.com/hesreallyhim/awesome-claude-code"
plugins_awesome_list_stars: "20k+"
chain_of_verification: "guide/methodologies.md:218"
chain_of_verification_paper: "https://arxiv.org/abs/2309.11495"
chain_of_verification_acl: "https://aclanthology.org/2024.findings-acl.212/"
# Verification Loops & Eval Harness (added 2026-01-23)
verification_loops: "guide/methodologies.md:218"
verification_loops_source: "https://www.anthropic.com/engineering/claude-code-best-practices"
eval_harness: "guide/methodologies.md:262"
eval_harness_source: "https://www.anthropic.com/engineering/demystifying-evals-for-ai-agents"
# GSD (Get Shit Done) methodology (added 2026-01-25)
gsd_methodology: "guide/methodologies.md:47"
gsd_evaluation: "docs/resource-evaluations/gsd-evaluation.md"
gsd_source: "https://github.com/glittercowboy/get-shit-done"
gsd_note: "Overlap with existing patterns (Ralph Loop, Gas Town, BMAD)"
# Resource Evaluations (added 2026-01-26, updated 2026-02-07)
resource_evaluations_directory: "docs/resource-evaluations/"
resource_evaluations_count: 55
resource_evaluations_methodology: "docs/resource-evaluations/README.md"
resource_evaluations_appendix: "guide/ultimate-guide.md:15034"
resource_evaluations_readme_section: "README.md:278"
resource_evaluations_git_mcp: "docs/resource-evaluations/git-mcp-server-evaluation.md"
resource_evaluations_anaconda_croce: "docs/resource-evaluations/anaconda-croce-evaluation.md"
resource_evaluations_grenier_quality: "docs/resource-evaluations/grenier-agent-skill-quality.md"
resource_evaluations_grenier_score: "3/5"
resource_evaluations_grenier_gap: "No automated quality checks for agents/skills (29.5% deploy without evaluation per LangChain 2026)"
resource_evaluations_grenier_integration: "Created /audit-agents-skills command + skill + criteria.yaml"
# Agent/Skill Quality Audit (added 2026-02-07)
audit_agents_skills_command: "examples/commands/audit-agents-skills.md"
audit_agents_skills_skill: "examples/skills/audit-agents-skills/SKILL.md"
audit_agents_skills_criteria: "examples/skills/audit-agents-skills/scoring/criteria.yaml"
audit_agents_skills_framework: "16 criteria (Identity 3x, Prompt 2x, Validation 1x, Design 2x)"
audit_agents_skills_scoring: "32 points max (agents/skills), 20 points (commands)"
audit_agents_skills_grades: "A-F scale, 80% production threshold"
audit_agents_skills_modes: "Quick (top-5), Full (all 16), Comparative (vs templates)"
audit_agents_skills_output: "Markdown + JSON for CI/CD integration"
audit_agents_skills_industry_context: "29.5% deploy without evaluation (LangChain 2026), 18% cite agent bugs as top challenge"
audit_agents_skills_guide_refs: "guide/ultimate-guide.md:4951 (after Agent Validation Checklist), guide/ultimate-guide.md:5495 (after Skill Validation)"
# Practitioner Insights (external validation)
practitioner_insights: "guide/ai-ecosystem.md:1209"
practitioner_dave_van_veen: "guide/ai-ecosystem.md:1213"
practitioner_matteo_collina: "guide/ai-ecosystem.md:1243"
practitioner_collina_source: "https://adventures.nodeland.dev/archive/the-human-in-the-loop/"
practitioner_steinberger: "guide/ai-ecosystem.md:1997"
practitioner_steinberger_source: "https://steipete.me/posts/2025/shipping-at-inference-speed"
practitioner_addy_osmani: "guide/ai-ecosystem.md:2024"
practitioner_osmani_source: "https://addyo.substack.com/p/the-80-problem-in-agentic-coding"
practitioner_alan: "guide/ai-ecosystem.md:2133"
practitioner_alan_source: "https://www.linkedin.com/pulse/le-principe-de-la-tour-eiffel-et-ralph-wiggum-maxime-le-bras-psmxe/"
verification_paradox: "guide/production-safety.md:639"
verification_paradox_source: "https://www.linkedin.com/pulse/le-principe-de-la-tour-eiffel-et-ralph-wiggum-maxime-le-bras-psmxe/"
eighty_percent_problem: "guide/ai-ecosystem.md:2024"
comprehension_debt_secondary: "guide/ai-ecosystem.md:2024" # See also: vibe_coding_trap (primary)
# DevOps/SRE Guide (guide/devops-sre.md)
devops_sre_guide: "guide/devops-sre.md"
devops_fire_framework: "guide/devops-sre.md:50"
devops_k8s_troubleshooting: "guide/devops-sre.md:120"
devops_k8s_prompts: "guide/devops-sre.md:160"
devops_incident_response: "guide/devops-sre.md:340"
devops_iac_patterns: "guide/devops-sre.md:520"
devops_guardrails: "guide/devops-sre.md:650"
devops_limitations: "guide/devops-sre.md:290"
devops_quick_reference: "guide/devops-sre.md:750"
devops_agent: "examples/agents/devops-sre.md"
devops_claude_md: "examples/claude-md/devops-sre.md"
# Product Designer (design-to-code workflow)
product_designer_workflow: "guide/workflows/design-to-code.md"
product_designer_claudemd: "examples/claude-md/product-designer.md"
design_system_handoff: "guide/workflows/design-to-code.md:531"
figma_make_integration: "guide/workflows/design-to-code.md:26"
pencil_canvas: "guide/ultimate-guide.md:529"
pencil_workflow: "guide/workflows/design-to-code.md:447"
pencil_vs_figma: "guide/workflows/design-to-code.md:470"
commands: 4950
command_template: 5020
hooks: 5273
hook_templates: 5418
security_hooks: 5680
security_gate_hook: 6907
security_gate_hook_source: "https://paddo.dev/blog/claude-code-team-tips/"
mcp_servers: 5984
serena_indexation: 6078
serena_mcp: 6037
doobidoo_memory_mcp: 6385
mcp_memory_stack_patterns: 6524
mcp_config: 6149
mcp_security: 6517
cicd: 6835
ide_integration: 7524
feedback_loops: 7594
batch_operations: 8024
pitfalls: 8143
git_best_practices: 8412
cost_optimization: 8878
session_teleportation: 9477
multi_instance_workflows: 9583
boris_cherny_case_study: 9617
boris_cherny_team_patterns: 11822
# Dual-Instance Planning Pattern (Jon Williams, Feb 2026)
dual_instance_planning: 12884
dual_instance_workflow: "guide/workflows/dual-instance-planning.md"
dual_instance_overview: 12884
dual_instance_setup: "guide/workflows/dual-instance-planning.md:49"
dual_instance_complete_workflow: "guide/workflows/dual-instance-planning.md:149"
dual_instance_plan_template: "guide/workflows/dual-instance-planning.md:457"
dual_instance_cost_analysis: "guide/workflows/dual-instance-planning.md:652"
dual_instance_comparison: 13074 # Boris vs Jon comparison table
dual_instance_source: "https://www.linkedin.com/posts/thatjonwilliams_ive-been-using-cursor-for-six-months-now-activity-7424481861802033153-k8bu"
dual_instance_author: "Jon Williams (Product Designer, UK)"
dual_instance_date: "2026-02-03"
dual_instance_pattern: "Vertical separation (planner vs implementer) - orthogonal to Boris horizontal scaling"
dual_instance_cost: "$100-200/month (vs $500-1K Boris pattern)"
dual_instance_audience: "Solo devs, spec-heavy work, quality > speed"
# External resource: Claude Code team tips (paddo.dev, Feb 2026)
team_tips_paddo: "https://paddo.dev/blog/claude-code-team-tips/"
team_tips_paddo_source: "Boris Cherny thread (x.com/bcherny/status/2017742741636321619)"
team_tips_paddo_evaluation: "docs/resource-evaluations/paddo-team-tips-eval.md"
team_tips_paddo_score: "4/5"
anthropic_study_metrics: 9721
# Contribution Metrics (Jan 2026 - platform feature, not CLI release)
contribution_metrics: 11625
contribution_metrics_source: "https://claude.com/blog/contribution-metrics"
contribution_metrics_date: "2026-01-29"
contribution_metrics_availability: "Public beta - Team and Enterprise plans"
contribution_metrics_stats: "+67% PRs merged/engineer/day, 70-90% AI-assisted code (Anthropic internal)"
git_worktrees_multi_instance: 10634
advanced_worktree_tooling: 10748
worktree_tooling_self_assessment: 10762
anthropic_internal_study: 10921
multi_instance_costs: 10955
orchestration_frameworks: 10992
headless_pm_framework: 11004
multi_instance_implementation: 11030
multi_instance_monitoring: 11103
multi_instance_decision_matrix: 11176
# External orchestration systems
external_orchestrators:
gas_town:
repo: "https://github.com/steveyegge/gastown"
author: "Steve Yegge"
description: "Multi-agent workspace manager using Claude Code instances"
status: "Experimental (Jan 2026)"
guide_section: "guide/ai-ecosystem.md:850"
multiclaude:
repo: "https://github.com/dlorenc/multiclaude"
author: "dlorenc"
description: "Self-hosted multi-agent Claude Code spawner (tmux + git worktrees)"
status: "Active development (Jan 2026, 383 stars)"
guide_section: "guide/ai-ecosystem.md:850"
agent_chat:
repo: "https://github.com/justinabrahms/agent-chat"
author: "Justin Abrahms"
description: "Real-time monitoring UI for Gas Town and multiclaude (SSE + SQLite)"
status: "Early preview (Jan 2026, v0.2.0)"
guide_section: "guide/ai-ecosystem.md:850"
# External research & alignment tools
external_research:
claude_constitution:
url: "https://www.anthropic.com/constitution"
pdf: "https://www-cdn.anthropic.com/9214f02e82c4489fb6cf45441d448a1ecd1a3aca/claudes-constitution.pdf"
announcement: "https://www.anthropic.com/news/claude-new-constitution"
description: "Claude's Constitutional AI framework - value hierarchy (safety > ethics > compliance > utility)"
license: "CC0 1.0 (public domain)"
published: "2026-01-21"
guide_section: "guide/data-privacy.md:296"
petri_v2:
repo: "https://github.com/safety-research/petri"
blog: "https://alignment.anthropic.com/2026/petri-v2/"
description: "Open-source AI behavior audit tool (Anthropic Alignment Science)"
features:
- "70 scenarios: collusion, ethics conflicts, info sensitivity"
- "Eval-awareness mitigations"
- "Benchmarks: Claude Opus 4.5, GPT-5.2, Gemini 3 Pro, Grok 4"
published: "2026-01-21"
guide_section: "README.md:338"
# Section 9.18 - Codebase Design for Agent Productivity
codebase_design_agents: 14121
codebase_design_source: "https://marmelab.com/blog/2026/01/21/agent-experience.html"
codebase_design_author: "François Zaninotto (Marmelab)"
codebase_design_llms_txt: 14543 # llms.txt standard for AI-optimized documentation
codebase_design_llms_txt_spec: "https://llmstxt.org/"
codebase_design_llms_txt_example: "machine-readable/llms.txt"
# Section 9.19 - Permutation Frameworks
permutation_frameworks: 13947
# Section 9.20 - Agent Teams (v2.1.32+ experimental)
agent_teams: "guide/workflows/agent-teams.md"
agent_teams_quick_start: "guide/workflows/agent-teams-quick-start.md" # Practical 8-10 min guide with copy-paste patterns
agent_teams_overview: 15992 # Section 9.20 in ultimate-guide.md
agent_teams_architecture: "guide/workflows/agent-teams.md:59"
agent_teams_setup: "guide/workflows/agent-teams.md:104"
agent_teams_use_cases: "guide/workflows/agent-teams.md:232"
agent_teams_fountain_case_study: "guide/workflows/agent-teams.md:254"
agent_teams_cred_case_study: "guide/workflows/agent-teams.md:282"
agent_teams_c_compiler_case_study: "guide/workflows/agent-teams.md:308"
agent_teams_paul_rayner_workflows: "guide/workflows/agent-teams.md:352"
agent_teams_workflow_impact: "guide/workflows/agent-teams.md:443"
agent_teams_limitations: "guide/workflows/agent-teams.md:529"
agent_teams_decision_tree: "guide/workflows/agent-teams.md:723"
agent_teams_best_practices: "guide/workflows/agent-teams.md:789"
agent_teams_troubleshooting: "guide/workflows/agent-teams.md:978"
agent_teams_experimental_flag: "CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS=true"
agent_teams_model_requirement: "Opus 4.6 minimum"
agent_teams_sources:
- "https://www.anthropic.com/news/claude-opus-4-6"
- "https://www.anthropic.com/engineering/building-c-compiler"
- "https://resources.anthropic.com/hubfs/2026%20Agentic%20Coding%20Trends%20Report.pdf"
- "https://dev.to/thegdsks/claude-opus-46-for-developers-agent-teams-1m-context-and-what-actually-matters-4h8c"
- "https://www.linkedin.com/posts/thepaulrayner_this-is-wild-i-just-upgraded-claude-code-activity-7425635159678414850-MNyv"
# Anthropic 2026 Trends (diffused across sections, not standalone)
agentic_trends_2026_report: "https://resources.anthropic.com/hubfs/2026%20Agentic%20Coding%20Trends%20Report.pdf"
agentic_trends_2026_evaluation: "docs/resource-evaluations/anthropic-2026-agentic-coding-trends.md"
agentic_trends_integration_strategy: "Diffusion transversale (industry data in 9.17, 9.20, 9.11, 9 intro)"
agentic_trends_research_data:
ai_usage: "60% of work (Anthropic internal study)"
full_delegation: "0-20% tasks (collaboration > delegation)"
productivity_gain: "67% more PRs merged/engineer/day"
new_work: "27% tasks wouldn't be done without AI"
agentic_trends_case_studies:
fountain: "50% faster screening (hierarchical multi-agent)"
rakuten: "7h autonomous vLLM (12.5M lines, 99.9% accuracy)"
cred: "2x execution speed, quality maintained (fintech)"
telus: "500K hours saved, 13K solutions, 30% faster"
legora: "Legal platform, lawyers automate without coding"
zapier: "89% adoption, 800+ internal agents"
augment_code: "4-8 months project → 2 weeks"
agentic_trends_benchmarks:
multi_instance_cost: "$500-1K/month (Boris pattern validation)"
agent_teams_timeline: "3-6 months adoption (enterprise)"
productivity_multiplier: "3x (capabilities × orchestration × experience)"
timeline_compression: "weeks → days (feature implementation)"
onboarding_speedup: "2-4 weeks → 4-8 hours (new codebase)"
agentic_trends_anti_patterns:
over_delegation: ">5 agents = coordination overhead"
premature_automation: "Automate before mastering manual"
tool_sprawl: ">10 MCP servers = maintenance burden"
no_roi_tracking: "Can't optimize what you don't measure"
# Advanced Plan Mode Patterns
rev_the_engine: 2323
mechanic_stacking: 2371
# Sub-Agent Patterns (Refactored 2026-02-09)
agent_anti_patterns: 3662 # Critical: Roles vs Context Control (Dex Horty principle)
scope_focused_agents: 3709 # Formerly "Split-Role Sub-Agents", refactored for context isolation
teammatetool_experimental: 3606 # Multi-agent orchestration parent section
# Task Management Diagnostic
task_lists_diagnostic: 3398
# Mental Model
main_thread_orchestrator: 2517
# CLAUDE.md Patterns
continuous_context_update: 3743
# Hook Patterns
smart_hook_dispatching: 6863
# Workflows
skeleton_projects_workflow: "guide/workflows/skeleton-projects.md"
# Spec-First Development (Addy Osmani, Jan 2026)
spec_first_workflow: "guide/workflows/spec-first.md"
spec_modular_design: "guide/workflows/spec-first.md:322"
spec_operational_boundaries: "guide/workflows/spec-first.md:372"
spec_command_template: "guide/workflows/spec-first.md:432"
spec_anti_monolithic: "guide/workflows/spec-first.md:472"
spec_osmani_source: "https://addyosmani.com/blog/good-spec/"
spec_osmani_evaluation: "docs/resource-evaluations/addy-osmani-good-spec.md"
spec_osmani_score: "4/5"
commands_table: 10213
shortcuts_table: 10246
troubleshooting: 10372
cheatsheet: 10747
daily_workflow: 13581
# AI Ecosystem (Section 11, ~line 10525)
ai_ecosystem: 10525
ai_ecosystem_complementarity: 10527
ai_ecosystem_tool_matrix: 10565
ai_ecosystem_workflows: 10590
ai_ecosystem_integration: 10716
ai_ecosystem_detailed: "guide/ai-ecosystem.md"
ai_ecosystem_goose: "guide/ai-ecosystem.md:1116"
ai_ecosystem_goose_comparison: "guide/ai-ecosystem.md:1132"
ai_ecosystem_context_packing: "guide/ai-ecosystem.md:1208"
ai_ecosystem_multi_ide_sync: "guide/ai-ecosystem.md:1256"
agents_md_support_status: "guide/ai-ecosystem.md:1322"
# Architecture Diagrams as Context (advanced pattern) - Added 2026-01-25
architecture_diagrams_input: "guide/ai-ecosystem.md:1379"
architecture_diagrams_mcp_tools:
- "Archy MCP: https://www.pulsemcp.com/servers/phxdev1-archy"
- "Mermaid MCP: 61.4K users"
- "Blueprint MCP (ArcadeAI)"
llm_oop_research: "https://dl.acm.org/doi/10.1145/3639474.3640052"
architecture_diagrams_source: "https://www.linkedin.com/posts/tigraff_uml-claude-wibecoding-activity-7420595633826258944-gGO5"
ai_ecosystem_voice_to_text: "guide/ai-ecosystem.md:449"
ai_ecosystem_alternative_providers: "guide/ai-ecosystem.md:959"
voice_refine_skill: "examples/skills/voice-refine/SKILL.md"
# Cowork documentation (v1.0 - migrated to dedicated repo)
cowork_reference: "machine-readable/cowork-reference.yaml" # Dedicated YAML index (kept local)
cowork_hub: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/README.md"
cowork_summary: "guide/cowork.md" # Summary remains in this repo
cowork_overview: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/guide/00-overview.md"
cowork_getting_started: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/guide/01-getting-started.md"
cowork_capabilities: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/guide/02-capabilities.md"
cowork_security: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/guide/03-security.md"
cowork_troubleshooting: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/guide/04-troubleshooting.md"
cowork_cheatsheet: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/reference/cheatsheet.md"
cowork_comparison: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/reference/comparison.md"
cowork_faq: "https://github.com/FlorianBruniaux/claude-cowork-guide/blob/main/reference/faq.md"
cowork_prompts: "https://github.com/FlorianBruniaux/claude-cowork-guide/tree/main/prompts"
cowork_workflows: "https://github.com/FlorianBruniaux/claude-cowork-guide/tree/main/workflows"
cowork_section: "guide/ai-ecosystem.md:760"
cowork_ultimate_guide: 10759
# Experimental Features
teammatetool: 3294
teammatetool_status: "Experimental, progressive rollout, feature-flagged"
teammatetool_capabilities: "Multi-agent coordination, team messaging, swarm patterns"
teammatetool_sources:
- "https://gist.github.com/kieranklaassen/4f2aba89594a4aea4ad64d753984b2ea"
- "https://github.com/anthropics/claude-code/issues/3013"
- "https://github.com/mikekelly/claude-sneakpeek"
# Appendix
appendix_a_file_locations: 14356
appendix_b_faq: 14530
faq_clawdbot_vs_claudecode: 14532
faq_product_managers: 14601
appendix_c_resource_evaluation: 15214
appendix_d_myths_vs_reality: 15257
myths_hidden_features: 15261
myths_tasks_api_autonomous: 15301
myths_100x_faster: 15340
myths_reliable_sources: 15388
# Quiz System (257 questions, 15 categories)
quiz_overview: "quiz/README.md"
quiz_file: "quiz/questions.json"
quiz_count: 257
quiz_categories: 15
quiz_beginner: "quiz/categories/basics,commands,shortcuts,reference"
quiz_beginner_count: 60
quiz_intermediate: "quiz/categories/workflows,context,agents,hooks"
quiz_intermediate_count: 100
quiz_advanced: "quiz/categories/mcp,production,advanced,learning,ecosystem"
quiz_advanced_count: 97
quiz_estimated_time_beginner: "15-20 min"
quiz_estimated_time_intermediate: "25-30 min"
quiz_estimated_time_advanced: "30-40 min"
# Onboarding matrix required keys (added for v2.0.0 adaptive architecture)
rules: 917 # Golden Rules section
workflow: 659 # Workflow (9 steps)
fix: 868 # Troubleshooting section
architecture: 819 # Architecture internals
production_safety: "guide/production-safety.md" # Production safety rules
security_hardening: "guide/security-hardening.md" # Security best practices
agent_validation_checklist: 3850 # Agent validation section in ultimate-guide.md
git_mcp_guide: "guide/mcp-servers-ecosystem.md:102" # Git MCP server documentation
# ════════════════════════════════════════════════════════════════
# DECISION TREE (most important - en premier)
# ════════════════════════════════════════════════════════════════
decide:
simple_task: "just ask Claude"
complex_task: "/plan first, then use Tasks API (v2.1.16+) or TodoWrite"
complex_task_multi_session: "use Tasks API with CLAUDE_CODE_TASK_LIST_ID"
context_high: "/compact (>70%) or /clear (>90%)"
repeating: "create agent or command"
need_docs: "Context7 MCP"
deep_debug: "use Opus (thinking enabled by default) - Alt+T to toggle"
# ════════════════════════════════════════════════════════════════
# PROMPTING FORMULA (see deep_dive.xml_prompting for details)
# ════════════════════════════════════════════════════════════════
prompt_formula:
WHAT: "concrete deliverable"
WHERE: "file paths"
HOW: "constraints, approach"
VERIFY: "success criteria"
example: |
Add input validation to login form.
WHERE: src/components/LoginForm.tsx
HOW: Use Zod, inline errors
VERIFY: Empty email shows error
# ════════════════════════════════════════════════════════════════
# WORKFLOW (9 steps) - see deep_dive.first_workflow
# ════════════════════════════════════════════════════════════════
workflow:
1: "claude"
2: "/status"
3: "Shift+Tab×2 for plan mode (if risky)"
4: "describe task (WHAT/WHERE/HOW/VERIFY)"
5: "review diff"
6: "y/n"
7: "run tests"
8: "commit"
9: "/compact when >70%"
# ════════════════════════════════════════════════════════════════
# CRITICAL COMMANDS - see deep_dive.essential_commands
# ════════════════════════════════════════════════════════════════
commands:
/compact: "compress context - USE AT >70%"
/clear: "reset conversation - USE AT >90%"
/status: "show context % and cost"
/plan: "read-only mode (safe exploration)"
/execute: "exit plan mode"
/rewind: "undo changes"
/model: "switch: sonnet|opus|opusplan"
/mcp: "show MCP server status"
/context: "detailed token breakdown"
/teleport: "bring web session to local CLI"
/tasks: "monitor background tasks"
/remote-env: "configure cloud environment"
# ════════════════════════════════════════════════════════════════
# SHORTCUTS - see deep_dive.shortcuts_table
# ════════════════════════════════════════════════════════════════
shortcuts:
Shift+Tab: "cycle: default → auto-accept → plan"
Esc×2: "rewind/undo"
Ctrl+C: "interrupt"
Ctrl+R: "search command history"
Ctrl+B: "background all tasks"
"@file": "reference file"
"!cmd": "shell command"
# ════════════════════════════════════════════════════════════════
# CLI FLAGS - see deep_dive.commands_table
# ════════════════════════════════════════════════════════════════
cli:
"-c": "continue last session"
"-r <id>": "resume specific session"
"--teleport": "bring web session to local CLI"
"-p": "non-interactive (pipe mode)"
"--model X": "select model"
"--dangerously-skip-permissions": "auto-accept ALL (danger)"
"--debug": "verbose output"
"--add-dir": "grant tool access to directories outside CWD"
# ════════════════════════════════════════════════════════════════
# CONTEXT MANAGEMENT - see deep_dive.context_management
# ════════════════════════════════════════════════════════════════
context:
zones:
green: "0-50% → work freely"
yellow: "50-70% → be selective"
orange: "70-90% → /compact NOW"
red: "90%+ → /clear required"
fresh_context: "Reset per task for long autonomous sessions - see Section 2.2 Fresh Context Pattern"
symptoms:
short_responses: "/compact"
forgetting_instructions: "/clear"
inconsistent: "context bleeding → /clear"
slow: "/compact or /clear"
# ════════════════════════════════════════════════════════════════
# MEMORY FILES - see deep_dive.memory_files
# ════════════════════════════════════════════════════════════════
memory:
global: "~/.claude/CLAUDE.md (not committed)"
project_team: "./CLAUDE.md (committed)"
project_personal: "./.claude/CLAUDE.md (not committed)"
priority: "project > global"
# ════════════════════════════════════════════════════════════════
# .claude/ STRUCTURE - see deep_dive.claude_folder
# ════════════════════════════════════════════════════════════════
folder_structure:
CLAUDE.md: "local instructions"
settings.json: "hooks config (committed)"
settings.local.json: "permissions (not committed)"
agents/: "custom AI personas"
commands/: "slash commands"
hooks/: "event scripts"
skills/: "knowledge modules"
rules/: "auto-loaded rules"
# ════════════════════════════════════════════════════════════════
# PERMISSION MODES - see deep_dive.permission_modes
# ════════════════════════════════════════════════════════════════
permissions:
default: "editing=ask, execution=ask"
auto_accept: "editing=auto, execution=ask"
plan_mode: "editing=blocked, execution=blocked"
switch: "Shift+Tab"
# ════════════════════════════════════════════════════════════════
# MCP SERVERS - see deep_dive.mcp_servers
# ════════════════════════════════════════════════════════════════
mcp:
serena: "symbol search + session memory (write_memory/read_memory) + project indexation"
doobidoo_memory: "semantic memory search + Knowledge Graph dashboard + 13+ clients (⚠️ under testing)"
doobidoo_install: "pip install mcp-memory-service && python -m mcp_memory_service.scripts.installation.install --quick"
doobidoo_dashboard: "http://localhost:8000"
doobidoo_vs_serena: "Serena=key-value (requires known key), doobidoo=semantic search (finds by meaning)"
doobidoo_backends: "sqlite_vec (local), cloudflare (multi-device), hybrid (local+cloud sync)"
doobidoo_tools: "store_memory, retrieve_memory, search_by_tag, delete_memory, list_memories, check_database_health, memory_graph"
doobidoo_data_location: "~/.mcp-memory-service/memories.db"
mcp_memory_stack: "4 layers: doobidoo (decisions) → Serena (symbols) → grepai (code search) → Context7 (docs)"
mcp_complementarity_patterns: "onboarding, ADR, debug persistence, multi-IDE coordination"
serena_indexation: "uvx --from git+https://github.com/oraios/serena serena project index [--force-full|--incremental] [--parallel N]"
serena_cache: ".serena/cache/typescript/ (add to .gitignore)"
context7: "library docs lookup"
sequential: "structured multi-step reasoning"
playwright: "browser automation / E2E"
figma: "design file access, tokens, structure (official)"
git_mcp: "version control automation (official Anthropic) - 12 tools for commits, branches, diffs, logs"
git_mcp_guide: "guide/mcp-servers-ecosystem.md:102"
git_mcp_tools: "git_status, git_log, git_diff, git_commit, git_add, git_reset, git_branch, git_create_branch, git_checkout, git_show, git_diff_unstaged, git_diff_staged"
git_mcp_install: "uvx mcp-server-git --repository /path/to/repo"
git_mcp_decision_matrix: "guide/mcp-servers-ecosystem.md:212" # Git MCP vs GitHub MCP vs Bash tool
git_mcp_repo: "https://github.com/modelcontextprotocol/servers/tree/main/src/git"
git_mcp_score: "8.5/10"
git_mcp_status: "Early development (API subject to change)"
git_mcp_advanced_filtering: "ISO 8601 dates, relative dates (2 weeks ago), absolute dates"
git_mcp_use_cases: "automated commits, log analysis, branch management, token-efficient diffs, multi-repo"
ast_grep: "optional plugin for AST-based code search (explicit invocation required)"
ast_grep_guide: "guide/ultimate-guide.md:6564"
ast_grep_skill: "examples/skills/ast-grep-patterns.md"
ast_grep_install: "npx skills add ast-grep/agent-skill"
ast_grep_when: "structural patterns (>50k lines, migrations, AST rules)"
ast_grep_not_for: "simple string search, small projects (<10k lines)"
search_decision_tree: "grep (text) | ast-grep (structure) | Serena (symbols) | grepai (semantic)"
search_tools_comparison: "guide/ultimate-guide.md:6517"
search_tools_mastery_workflow: "guide/workflows/search-tools-mastery.md"
grep_vs_rag_history: "guide/architecture.md:33"
ripgrep_native: "Grep tool (Claude Code built-in, ~20ms)"
grepai_semantic: "Semantic search + call graph (Ollama-based, ~500ms)"
grepai_benchmark:
source: "https://yoandev.co/grepai-benchmark"
guide_section: "guide/workflows/search-tools-mastery.md:240"
date: "2026-01-20"
summary: "-55% tool calls, -97% tokens vs grep (Excalidraw 155k TS)"
caveat: "Benchmark by tool maintainer, single-project validation"
serena_symbols: "Symbol-aware + session memory (~100ms)"
astgrep_structural: "AST patterns for large refactoring (~200ms)"
search_combined_workflow: "guide/workflows/search-tools-mastery.md:205"
check: "/mcp"
config: ".claude/mcp.json or ~/.claude.json"
tool_search: "lazy loading MCP tools (v2.1.7+) - 85% token reduction - auto:N threshold config"
tool_search_config: "ENABLE_TOOL_SEARCH=auto|auto:N|true|false"
tool_search_deep_dive: "guide/architecture.md:1000"
# ════════════════════════════════════════════════════════════════
# ARCHITECTURE INTERNALS - see guide/architecture.md
# ════════════════════════════════════════════════════════════════
architecture:
master_loop: "while(tool_call) - no DAG, no classifier, no RAG"
core_tools: "Bash, Read, Edit, Write, Grep, Glob, Task, TodoWrite"
context_budget: "~200K tokens, auto-compact at 75-92%"
subagents: "Task tool spawns isolated agents (depth=1 max)"
teammatetool: "Experimental multi-agent coordination (v3294)"
philosophy: "less scaffolding, more model - trust Claude's reasoning"
mcp_protocol: "JSON-RPC 2.0, treated as native tools"
permissions: "interactive prompts + allow/deny rules + hooks"
deep_dive: "guide/architecture.md"
# ════════════════════════════════════════════════════════════════
# COST OPTIMIZATION - see deep_dive.cost_optimization
# ════════════════════════════════════════════════════════════════
cost:
haiku: "simple fixes, reviews ($)"
sonnet: "most development ($$)"
opus: "architecture, complex bugs ($$$)"
opusplan: "plan=opus + execute=sonnet ($$)"
tip: "--add-dir grants tool access to additional directories (permissions, not context loading)"
rtk: "Command output filtering (72.6% avg reduction) - rtk git log/status/diff"
# ════════════════════════════════════════════════════════════════
# TOOL SELECTION
# ════════════════════════════════════════════════════════════════
tools:
file_search: "Glob (not find)"
content_search: "Grep (not grep bash)"
file_read: "Read (not cat)"
file_edit: "Edit (not sed)"
multi_file: "MultiEdit"
deep_analysis: "Sequential MCP"
library_docs: "Context7 MCP"
browser: "Playwright MCP"
# ════════════════════════════════════════════════════════════════
# ANTI-PATTERNS - see deep_dive.pitfalls
# ════════════════════════════════════════════════════════════════
dont:
- "vague prompts → be specific"
- "accept without reading → read every diff"
- "ignore >70% context → /compact"
- "skip permissions in prod → never"
- "bloated CLAUDE.md → keep concise (<200 lines)"
- "only negative constraints → provide alternatives"
# ════════════════════════════════════════════════════════════════
# TROUBLESHOOTING - see deep_dive.troubleshooting
# ════════════════════════════════════════════════════════════════
fix:
"command not found": "npm i -g @anthropic-ai/claude-code"
"context too high": "/compact or /clear"
"slow responses": "/compact"