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hisub.R

Lines changed: 27 additions & 25 deletions
Original file line numberDiff line numberDiff line change
@@ -9,15 +9,19 @@
99
# 5. 生成 .json (data.json, meta.json, ui.json)
1010
# 6. 基于配置和输入文件生成 plot.R
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#
12-
# Test: ./hisub.R test_ezcox.R ezcox
13-
# Test: ./hisub.R test_pcatools.R pcatools
12+
# ./hisub.R examples/helloworld.R test_hello
13+
VERSION = 0.1
1414

15-
suppressMessages(library(readr))
16-
suppressMessages(library(dplyr))
17-
suppressMessages(library(purrr))
18-
suppressMessages(library(jsonlite))
19-
suppressMessages(library(styler))
15+
message("HiSub version ", VERSION)
16+
message("Copyright (c) 2021 Hiplot (https://hiplot.com.cn/)")
17+
message("========================")
2018

19+
message("Checking dependencies...")
20+
if (!require("pacman")) install.packages("pacman")
21+
suppressMessages(pacman::p_load(readr, dplyr, purrr, jsonlite, styler))
22+
message("Done")
23+
24+
message("Checking input...")
2125
Args <- commandArgs(trailingOnly = TRUE)
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# Args <- c("test.R", "test-plugin2")
2327

@@ -34,10 +38,14 @@ if (length(Args) > 2) {
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3539
if (!dir.exists(outdir)) dir.create(outdir, recursive = TRUE)
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if (flag) {
41+
message("Copying middle files...")
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file.copy(Args[2:(length(Args) - 1)], outdir)
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}
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message("Done")
45+
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# Preprocessing -----------------------------------------------------------
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48+
message("Preprocessing R script ", Args[1])
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# 过滤无关行
4250
file_content <- file_content[startsWith(file_content, "#")]
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file_content <- file_content[
@@ -50,8 +58,12 @@ splitAt <- function(x, pos) unname(split(x, cumsum(seq_along(x) %in% pos)))
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5159
tag_list <- splitAt(file_content, grep("# *@", file_content))
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61+
message("Done")
62+
5363
# Parsing content ---------------------------------------------------------
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65+
message("Parsing Hiplot tags...")
66+
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# 针对每一个元素解析标签和内容
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tag_name <- map_chr(tag_list, ~ sub("# *@([^ ]+).*", "\\1", .[1]))
5769

@@ -105,8 +117,6 @@ parse_tag_citation <- function(x) {
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x[-1] <- sub("^# *", "", x[-1])
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}
107119
x <- paste(x[x != ""], collapse = "\n")
108-
message("\nCitation info parsed.")
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cat(x)
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list(type = "citation", value = x)
111121
}
112122

@@ -155,11 +165,6 @@ parse_tag_description <- function(x) {
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x_en <- doc_list$en
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x_zh <- doc_list$zh
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158-
message("\nDescription info parsed.")
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message("en:")
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cat(x_en)
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message("\nzh:")
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cat(x_zh)
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list(type = "description", value = list(
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en = x_en,
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zh = x_zh
@@ -176,15 +181,13 @@ parse_tag_library <- function(x) {
176181
}
177182
x <- paste(x, collapse = " ")
178183
x <- unlist(strsplit(x, split = " "))
179-
message("\nRequired packages parsed.")
180-
cat(x)
184+
181185
list(type = "library", value = x)
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}
183187

184188
parse_tag_param <- function(x) {
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param_name <- parse_tag_value(x[1])
186190
if (!grepl("export::", x[1])) {
187-
message("\nNo export detected.")
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return(NULL) # No returns
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}
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@@ -236,8 +239,6 @@ parse_tag_data <- function(x) {
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x <- sub("^# *", "", x)
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x <- x[!grepl("^@|#", x)]
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x <- paste(x, collapse = "\n")
239-
message("\nCode to generate data parsed.")
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cat(x)
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list(type = "data", value = x)
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}
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@@ -274,11 +275,12 @@ a <- compact(a)
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# Generate data files -----------------------------------------------------
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if ("data" %in% names(a)) {
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message("Generating data file...")
278+
message("Generating example data file...")
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old_wd <- getwd()
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setwd(outdir)
280281
eval(parse(text = a$data$value))
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setwd(old_wd)
283+
message("Done")
282284
}
283285

284286
# Generate plugin files ---------------------------------------------------
@@ -454,7 +456,7 @@ json_meta <- list(
454456
)
455457
)
456458

457-
message(" meta.json")
459+
message(" - meta.json")
458460
# jsonlite::toJSON(json_meta, auto_unbox = TRUE, pretty = TRUE)
459461
write_json(json_meta, file.path(outdir, "meta.json"), auto_unbox = TRUE, pretty = TRUE)
460462

@@ -508,7 +510,7 @@ if (length(unlist(a$params$example_data)) > 0) {
508510
}
509511
if (length(a$params$example_textarea) > 0) json_data$exampleData$textarea <- a$params$example_textarea
510512

511-
message(" data.json")
513+
message(" - data.json")
512514
# jsonlite::toJSON(json_data, auto_unbox = TRUE, pretty = TRUE)
513515
write_json(json_data, file.path(outdir, "data.json"),
514516
null = "list", auto_unbox = TRUE, pretty = TRUE
@@ -525,15 +527,15 @@ json_ui <- list(
525527
extra = a$params$ui_extra
526528
)
527529

528-
message(" ui.json")
530+
message(" - ui.json")
529531
# json_ui <- jsonlite::toJSON(json_ui, auto_unbox = TRUE, pretty = TRUE)
530532
write_json(json_ui, file.path(outdir, "ui.json"),
531533
null = "list", auto_unbox = TRUE, pretty = TRUE
532534
)
533535

534536
# plot.R
535537
# 保留输入脚本
536-
message(" plot.R")
538+
message(" - plot.R")
537539
write_lines(fc, file.path(outdir, "plot.R"))
538540
# 生成 plot.R 进行调用
539541
args_pairs <- map(
@@ -630,4 +632,4 @@ write_lines(plot_r, file.path(outdir, "plot.R"), append = TRUE)
630632

631633
style_file(file.path(outdir, "plot.R"))
632634

633-
# output file
635+
message("ALL operations done")

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