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Hi Henry,
I ran into the following error when using scrat today.
Error: Problem with filter() input ..1.
ℹ Input ..1 is top_n_rank(n_genes, avg_logFC).
x object 'avg_logFC' not found
ℹ The error occurred in group 1: cluster = 0.
My R session information is as follows:
R version 4.0.5 (2021-03-31)
os Ubuntu 20.04.2 LTS
Seurat 4.0.1
scrat 2.0.2
I think the error might be related to the recent change in Seurat: avg_logFC has been replaced by avg_log2FC.
Could you help check if this is the issue and update the package please?
Many thanks,
Cass
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