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midas-data.owl
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1669 lines (1095 loc) · 83.2 KB
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://midasnetwork.us/datasets/midas-data.owl#"
xml:base="http://midasnetwork.us/datasets/midas-data.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:www="http://www.referent-tracking.com/"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:apollo_sv="http://purl.obolibrary.org/obo/apollo_sv.owl/">
<owl:Ontology rdf:about="http://midasnetwork.us/datasets/midas-data.owl">
<owl:versionIRI rdf:resource="http://midasnetwork.us/datasets/v2023-06-08/midas-data.owl"/>
<terms:description>An ontology of midas data types.</terms:description>
<rdfs:comment>Testing automated release process by editing the midas-data-edit.owl file.</rdfs:comment>
<owl:versionInfo>2023-06-08</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<rdfs:label>editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<rdfs:label>example of usage</rdfs:label>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<rdfs:label>has curation status</rdfs:label>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<rdfs:label>editor note</rdfs:label>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<rdfs:label>definition editor</rdfs:label>
<rdfs:label xml:lang="en">definition editor</rdfs:label>
<rdfs:label>term editor</rdfs:label>
<rdfs:label xml:lang="en">term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<rdfs:label>alternative term</rdfs:label>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<rdfs:label>definition source</rdfs:label>
<rdfs:label xml:lang="en">definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
<rdfs:label xml:lang="en">elucidation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/STATO_0000032 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032">
<rdfs:label xml:lang="en">STATO alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040">
<rdfs:label xml:lang="en">Unique Apollo Label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator">
<rdfs:label xml:lang="en-us">Creator</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type">
<rdfs:label>dc:type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has exact synonym</rdfs:label>
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace">
<rdfs:label>has_obo_namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:label>id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:label>in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#source -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#source"/>
<!-- http://www.referent-tracking.com/RTS_00000001 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000001"/>
<!-- http://www.referent-tracking.com/RTS_00000002 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000002"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<rdfs:label>label</rdfs:label>
<rdfs:label xml:lang="en">label</rdfs:label>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000115 xml:lang="en">An action specification giving the number of vaccinations possible in a population during a specific time interval.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">The counts of individuals that could be vaccinated in a population location per time step unit in the absence of any vaccine supply constraints. It represents the capacity of medical system to vaccinate individuals.</obo:IAO_0000600>
<rdfs:label xml:lang="en">vaccination administration capacity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000159 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000159">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">A census that is the specific outcome of a population demographic survey.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A census that is the specific outcome of a population demographic survey.</obo:IAO_0000600>
<rdfs:label xml:lang="en">population demographic census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000174 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000174">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas15"/>
<obo:IAO_0000115 xml:lang="en">An algorithm that models the progress of a transmissible disease in a population.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An algorithm that models the progress of a transmissible disease in a population.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>disease transmission model</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">disease transmission model</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000237 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000237">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An organism, virus, or prion that can infect another organism.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>pathogen</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">pathogen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000238 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000238">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040 xml:lang="en">host</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">host</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000397 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000397">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A data set that is a collection of case records.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A data set that is a collection of case records.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>CaseList</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">infection case list</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000542 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000542">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111 xml:lang="en">population mortality data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.</obo:IAO_0000600>
<rdfs:label xml:lang="en">mortality data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000591 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000591">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000593"/>
<obo:IAO_0000111 xml:lang="en">climate data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is an aggregate of data items that are about an environmental system process (e.g., hydrological precipitation) or a participant in an environmental system process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Matt Diller</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">climate data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000593 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000593">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111 xml:lang="en">abiotic ecosystem data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is about some abiotic ecosystem or abiotic ecosystem element.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">abiotic ecosystem dataset</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data set about an abiotic ecosystem or abiotic ecosystem element</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">A data set that is about an abiotic ecosystem or some abiotic ecosystem element.</obo:IAO_0000600>
<rdfs:label xml:lang="en">abiotic ecosystem data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000595 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000595">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas21"/>
<obo:IAO_0000111 xml:lang="en">census of treatment facility</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A census that counts the number of treatment facilities of some kind in a particular geographical region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">census of treatment facilities</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">treatment facilities census</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">treatment facility census</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">A census that counts the number of treatment facilities of some kind in a particular geographical region.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">NOTE: this class counts the facilities themselves, not patients (people) in those facilities. For example, how many hospitals in a state. Not how many patients are in a hospital or hospitals in a state.</rdfs:comment>
<rdfs:label xml:lang="en">treatment facility census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000600 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000600">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000111 xml:lang="en">dataset about hospital stays</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The datasets at this link are rdf:type this class: https://www.opendataphilly.org/dataset/covid-hospitalizations</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a dataset that is about two or more hospital stays involving two or more patients.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">hospital discharge dataset</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">hospitalization dataset</obo:IAO_0000118>
<rdfs:comment xml:lang="en">The dataset may be limited to stays in one hospital, but hospital discharge datasets as compiled by state departments of health typically contain stays from multiple hospitals (typically every hospital) in the geographical region over which they have jurisdiction</rdfs:comment>
<rdfs:label xml:lang="en">hospital stay dataset</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000602 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000602">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas79"/>
<obo:IAO_0000111 xml:lang="en">human daily movement behavior data set</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">https://www.google.com/covid19/mobility/</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a data set that is about the human daily movement behavior of the individual huamns in a given population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">human daily movement data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000603 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000603">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas79"/>
<obo:IAO_0000111 xml:lang="en">potentially infectious contact process data set in a population</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a data set that is about one or more potentially infectious contact processes in a population of host organisms.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">contact data set</obo:IAO_0000118>
<rdfs:label xml:lang="en">potentially infectious contact data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000604 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000604">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111 xml:lang="en">infectious disease control strategy census</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">control strategy census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000605 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000605">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">school closure infectious disease control strategy census</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">an infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere.</rdfs:comment>
<rdfs:label xml:lang="en">school closure control strategy census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000607 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000607">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">population vaccination census</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">vaccine / immunization registry data, vaccination / immunization records extracted from an EHR</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a population treatment census that is about one or more vaccinations of organisms in a population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">vaccination census</obo:IAO_0000118>
<rdfs:label xml:lang="en">vaccination administration census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000608 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000608">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000542"/>
<obo:IAO_0000111 xml:lang="en">dataset about excess mortality in a population</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Often used during epidemics or pandemics to estimate the death toll.</rdfs:comment>
<rdfs:label xml:lang="en">excess mortality dataset</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000609 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000609">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">census of supplies of vaccine products</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A control strategy inventory census that counts available vaccine doses of one or more similar vaccines.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">vaccine availability</obo:IAO_0000118>
<rdfs:comment xml:lang="en">Motivated my MIDAS coordination center indexing of COVID-19 data, software, etc.
By "similar vaccines" we typically mean same pathogen, but could be similar in other ways (requiring refrigeration of a certain kind).</rdfs:comment>
<rdfs:label xml:lang="en">census of vaccination supplies</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">census of facilities that conduct clinical laboratory tests</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A census of facilities that conduct clinical laboratory testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">testing availability</obo:IAO_0000118>
<rdfs:comment xml:lang="en">The census might also include information about each facility such as operating hours, address, accessibility, and so on.</rdfs:comment>
<rdfs:label xml:lang="en">laboratory testing facility census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000613 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000613">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">laboratory testing capacity action specification</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An action specification giving the number of laboratory tests of a certain type that it is possible to perform in a given population during a specific time interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">laboratory testing capacity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000614 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000614">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000593"/>
<obo:IAO_0000111 xml:lang="en">data set about Earth's atmospheric weather</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set about the Earth's atmospheric weather</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">weather data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000615 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000615">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_3292"/>
<obo:IAO_0000111 xml:lang="en">monkeypox disease inhering in a human being</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A monkeypox disease inhering in a human being.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">requested by MIDAS CC</rdfs:comment>
<rdfs:label xml:lang="en">human monkeypox</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_60816 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_60816">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>An antigen capable, on its own, of inducing an immune response.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">immunogenicity</obo:IAO_0000118>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/chebi/213/chebi.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref>PMID:19152635</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PMID:19328011</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PMID:19397283</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:60816</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<oboInOwl:source>Europe PMC</oboInOwl:source>
<rdfs:label>immunogen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CTO_0000220 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CTO_0000220">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>a clinical trial is a medical interventional study where participants are assigned prospectively to an intervention or interventions according to a protocol to evaluate the safety and efficacy of the intervention(s) on biomedical or other health related outcomes. The Interventions include but are not restricted to drugs, cells and other biological products, surgical procedures, radiologic procedures, devices, behavioral treatments, process-of-care changes, preventive care, etc.</obo:IAO_0000115>
<obo:IAO_0000117>Oliver He, Asiyah Yu Lin, Qingliang Li</obo:IAO_0000117>
<obo:IAO_0000118>interventional trial</obo:IAO_0000118>
<obo:IAO_0000119>https://clinicaltrials.gov/ct2/search/map</obo:IAO_0000119>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Clinical_trial</obo:IAO_0000119>
<obo:IAO_0000119>https://prsinfo.clinicaltrials.gov/definitions.html</obo:IAO_0000119>
<obo:IAO_0000119>https://www.who.int/ictrp/en/</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/cto.owl</obo:IAO_0000412>
<rdfs:label xml:lang="en">clinical trial</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_0080600 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_0080600">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<obo:IAO_0000115>A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref>ICD10CM:U07.1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D000086382</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C171133</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:840539006</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C5203670</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.cdc.gov/coronavirus/2019-ncov/about/index.html</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=32007143</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=32007145</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.who.int/emergencies/diseases/novel-coronavirus-2019</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym xml:lang="en">2019 Novel Coronavirus (2019-nCoV)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">2019-nCoV infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>COVID19</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>SARS-CoV-2 infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">Wuhan coronavirus infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">Wuhan seafood market pneumonia virus infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:0080600</oboInOwl:id>
<rdfs:label xml:lang="en">COVID-19</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_3292 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_3292">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<obo:IAO_0000115>A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007637"/>
<oboInOwl:hasDbXref>GARD:10722</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD10CM:B04</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD9CM:059.01</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D045908</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C128421</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:240466002</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C0276180</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:http://www.cdc.gov/ncidod/monkeypox/factsheet2.htm</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:3292</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#NCIthesaurus"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#zoonotic_infectious_disease"/>
<rdfs:label>mpox</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_4 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_4">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007645"/>
<oboInOwl:hasDbXref>MESH:D004194</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C2991</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:64572001</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C0012634</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041577/</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:4</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#DO_RAD_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#NCIthesaurus"/>
<rdfs:label>disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000010">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Software is a plan specification composed of a series of instructions that can be
interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl</obo:IAO_0000412>
<rdfs:label xml:lang="en">software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000100">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000111 xml:lang="en">data set</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type</obo:IAO_0000116>
<obo:IAO_0000116>2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000042</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000042</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl</obo:IAO_0000412>
<apollo_sv:APOLLO_SV_0000040>dataSets</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000436 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000436">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_4"/>
<obo:IAO_0000115 xml:lang="en">A disease whose physical basis is an infectious disorder.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">tranmissible disease</obo:IAO_0000118>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl</obo:IAO_0000412>
<rdfs:comment>The disposition is realized in an infectious disease course.</rdfs:comment>
<rdfs:label xml:lang="en">infectious disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_10244 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10244">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000237"/>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<rdfs:label>Monkeypox virus</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2697049 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2697049">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000237"/>
<oboInOwl:hasBroadSynonym>SARS-CoV-2</oboInOwl:hasBroadSynonym>
<oboInOwl:hasDbXref>GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>2019-nCoV</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>COVID-19 virus</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>HCoV-19</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Human coronavirus 2019</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>SARS-2</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>SARS-CoV2</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>SARS2</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:label>Severe acute respiratory syndrome coronavirus 2</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000238"/>
<oboInOwl:hasDbXref>GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>human</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:label>Homo sapiens</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBI_0001530 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001530">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111>data service</obo:IAO_0000111>
<obo:IAO_0000112>Data analysis service such statistical abalysis or storage service such data backup.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A service that has some information content entity as input and output.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Carlo Torniai</obo:IAO_0000117>
<obo:IAO_0000117>PERSON: Matthew Brush</obo:IAO_0000117>
<obo:IAO_0000119>PERSON: Carlo Torniai</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl</obo:IAO_0000412>
<rdfs:comment>Information content entity was used as specified input and output since it was more appropriate then data item or dataset.</rdfs:comment>
<rdfs:label>data service</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000205 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000205">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000159"/>
<obo:IAO_0000115 xml:lang="en">A social identity information content entity that is about whether some person identifies as some ethnicity.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">S. Clint Dowland</obo:IAO_0000117>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/omrse/releases/2022-09-06/omrse.owl</obo:IAO_0000412>
<dc:contributor xml:lang="en">Amanda Hicks</dc:contributor>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">Matthew Diller</dc:contributor>
<dc:contributor xml:lang="en">Sarah Bost</dc:contributor>
<dc:contributor xml:lang="en">William R. Hogan</dc:contributor>
<rdfs:comment xml:lang="en">Ethnicity is separate from but related to racial identity. It refers more to identifying with a particular culture than with individuals similar in physical appearance. It includes things like Hispanic ethnicity (which spans many nations) and national cultural identities like Irish and ethnic groups within nations such as Catalan and Armenian.</rdfs:comment>
<rdfs:label xml:lang="en">ethnic identity information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000209 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000209">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000159"/>
<obo:IAO_0000115 xml:lang="en">A social identity information content entity that is about whether some person identifies as some gender.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">S. Clint Dowland</obo:IAO_0000117>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/omrse/releases/2022-09-06/omrse.owl</obo:IAO_0000412>
<dc:contributor xml:lang="en">Amanda Hicks</dc:contributor>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">Matthew Diller</dc:contributor>
<dc:contributor xml:lang="en">Sarah Bost</dc:contributor>
<dc:contributor xml:lang="en">William R. Hogan</dc:contributor>
<rdfs:label xml:lang="en">gender identity information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000213 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000213">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000159"/>
<obo:IAO_0000115 xml:lang="en">A social identity information content entity that is about whether some person identifies as some race.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">S. Clint Dowland</obo:IAO_0000117>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/omrse/releases/2022-09-06/omrse.owl</obo:IAO_0000412>
<dc:contributor xml:lang="en">Amanda Hicks</dc:contributor>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">Matthew Diller</dc:contributor>
<dc:contributor xml:lang="en">Sarah Bost</dc:contributor>
<dc:contributor xml:lang="en">William R. Hogan</dc:contributor>
<rdfs:label xml:lang="en">racial identity information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0001894 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001894">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000159"/>
<obo:IAO_0000115>An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato.owl</obo:IAO_0000412>
<oboInOwl:hasOBONamespace>quality</oboInOwl:hasOBONamespace>
<oboInOwl:id>PATO:0001894</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:label>phenotypic sex</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0001260 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0001260">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>A collection of discontinuous sequences.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/so/2021-11-22/so.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref>SO:ke</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>sequence collection</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>sequence</oboInOwl:hasOBONamespace>
<oboInOwl:id>SO:0001260</oboInOwl:id>
<rdfs:label xml:lang="en">sequence collection</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000107 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000107">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas16"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115 xml:lang="en">a statistical model is an information content entity which is a formalization of relationships between variables in the form of mathematical equations. A statistical model describes how one or more random variables are related to one or more other variables. The model is statistical as the variables are not deterministically but stochastically related.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000117>Orlaith Burke</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">adapted from Wikipedia:
http://en.wikipedia.org/wiki/Statistical_model
last accessed: 14/01/2014</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/stato.owl</obo:IAO_0000412>
<obo:STATO_0000032 xml:lang="en">statistical model</obo:STATO_0000032>
<rdfs:label xml:lang="en">statistical model</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas0 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas0">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>A medical diagnosis associated with a given outbreak or dataset related to that outbreak. Usually will refer to an ICD, NCIT, UMLS, or similar code.</obo:IAO_0000115>
<rdfs:comment></rdfs:comment>
<rdfs:label xml:lang="en">diagnosis</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas03 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas03">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<obo:IAO_0000115 xml:lang="en">Level of details of the location: ADMIN0, ADMIN1, Country, State, … (can be multiple).</obo:IAO_0000115>
<rdfs:comment xml:lang="en">List comes from GEONAMES class like: "Dependent political entity" or "First-order administrative division", but it also contains common terms (from https://en.wikipedia.org/wiki/Administrative_division for example) to help with the data entry</rdfs:comment>
<rdfs:label xml:lang="en">geographical resolution</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas04 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas04">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas16"/>
<obo:IAO_0000115 xml:lang="en">Expertise-driven estimates from epidemiologists, modelers, or others with domain knowledge</obo:IAO_0000115>
<rdfs:label xml:lang="en">expert assessment / opinion</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas10 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas10">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<obo:IAO_0000115>Descriptors of the data found in the dataset - broadly categorizing the entries that might be annotated with this model</obo:IAO_0000115>
<rdfs:label xml:lang="en">digital object type</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas11 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas11">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000115>A collection of links to other data items, often found in external repositories. No claims are made as to the format or consistency of the items associated with those links.</obo:IAO_0000115>
<rdfs:comment>Probably should link to some external dataset.</rdfs:comment>
<rdfs:label xml:lang="en">catalog</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas12 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas12">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000115>An interactive display, usually in the form of a web page, that provides a summary of the current state of some dataset, usually from multiple perspectives. May include both counrs and forecats.</obo:IAO_0000115>
<rdfs:comment>link to some existing ontological term?</rdfs:comment>
<rdfs:label xml:lang="en">dashboard</rdfs:label>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas13 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas13">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000115>Code that allows users to change input and obtain modified output (interactive)</obo:IAO_0000115>
<obo:IAO_0100001 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/IAO_0000010</obo:IAO_0100001>
<rdfs:comment>link to some external entity?</rdfs:comment>
<rdfs:label xml:lang="en">Software</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas14 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas14">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000115>A collection of data presented in a formatted and defined manner, along with metadata enabling interpretation of that data. Might be one of the elements in a catalog or repository</obo:IAO_0000115>
<obo:IAO_0100001>http://purl.obolibrary.org/obo/IAO_0000100</obo:IAO_0100001>
<rdfs:comment>is there some existing external definition to tie this to?</rdfs:comment>
<rdfs:label xml:lang="en">Dataset</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://w3id.org/midas-metadata/midas15 -->
<owl:Class rdf:about="http://w3id.org/midas-metadata/midas15">