science--research.md

🔬 Science & Research

Servers accessing scientific databases, research platforms, or providing tools for scientific computation/simulation.

• connerlambden/bgpt-mcp: Search scientific papers with structured experimental data extracted from full-text studies, returning 25+ fields per paper including methods, results, sample sizes, and quality scores.
• GreatApo/concrete-properties-mcp: Facilitates AI-driven analysis of reinforced concrete sections by providing a unified API interface for calculating geometric and material properties.
• GooTec/NCBI-MCP: Facilitates access to NCBI Datasets through a modular MCP server with OpenAPI-driven endpoints for genome, gene, and taxonomy data.
• leelasd/molecule_mcp: Facilitates chemistry-focused applications by visualizing molecules and retrieving molecular properties using SMILES codes, integrated with LLMs like Claude Desktop.
• RLabs-Inc/ios-forensics-mcp: Facilitates forensic analysis of iOS file systems, enabling AI assistants to explore and report on digital artifacts.
• koido/liftover-mcp: Facilitates genomic coordinate conversion using the Broad Institute's Liftover tool via a programmatic interface.
• Rkm1999/CelestialMCP: CelestialMCP offers precise astronomical calculations for celestial object positions and rise/set times, integrating seamlessly with Claude AI.
• simpolism/AstroMCP: AstroMCP provides AI assistants with astrological chart functionality, integrating seamlessly via the Model Context Protocol.
• Nicolassaint/mathsIA_API: MathsIA API integrates FastAPI-MCP to enable AI models to manage a flashcard system for math learning, offering features for user management and progress tracking.
• Xinruims/my_experiment: Enhance Roo Code with MCP server implementations for AI-driven coding tools, offering seamless integration and configuration across platforms.
• liuyixin-louis/ArxivMCP: Facilitates academic paper searches on arXiv with MCP client integration for seamless retrieval.
• wildsonbbl/gnnepcsaft_mcp_server: Facilitates communication and context management for GNNePCSAFT tools using the Model Context Protocol.
• milatechtransfer/paperpal: Enhance your literature review process by integrating LLMs with access to arXiv, Hugging Face papers, and Semantic Scholar.
• rperezll/mcp-lab: A personal lab exploring the Model Context Protocol SDK in TypeScript, featuring basic and advanced implementations like a Text-to-SQL server.
• falahgs/Brave-Gemini-Research-MCP-Server: Empowers AI assistants with web search and research paper analysis using Brave Search API and Google's Gemini model.
• Orthogonalpub/modelica_simulation_mcp_server: Facilitates Modelica model simulations, enabling LLMs to execute and manage Modelica-related tasks.
• ytworks/openMM-Doc-MCP: Facilitates semantic search through OpenMM molecular dynamics documentation using vector embeddings and FAISS for efficient retrieval, optimized for LLM integration.
• arrismo/kaggle-mcp: Facilitates interaction with Kaggle by providing tools for dataset search, download, and EDA notebook generation via the Model Context Protocol.
• mila-iqia/paperpal: Enhance your literature review process by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.
• huang-sh/scanpy-mcp: Facilitates natural language-driven scRNA-Seq analysis using Scanpy, enabling seamless integration with AI clients and agent frameworks.
• cafferychen777/ChatSpatial: Enables spatial transcriptomics analysis through natural language, integrating 60+ methods for spatial domains, deconvolution, cell communication, and trajectory analysis across Visium, Xenium, MERFISH and more.
• datalayer/jupyter-earth-mcp-server: Facilitates geospatial analysis in Jupyter notebooks by integrating NASA Earthdata with Model Context Protocol.
• fdmocho/mcp_server_nasa: Facilitates integration with NASA's Near Earth Object API, enabling date-specific data retrieval through an MCP server setup.
• hiyenwong/arxiv_mcp: Facilitates the search and interpretation of academic papers from arXiv using MCP technology.
• demouth/learn-mcp-server: A simple MCP server implementation for educational purposes, supporting basic arithmetic operations and integration with Claude Desktop.
• Codeshark-NET/climate-triage-mcp: Integrates with the ClimateTriage API to facilitate searching for open source issues related to climate change and sustainability.
• chcharcharlie/10XResearcher: 10XResearcher enhances Claude into a systematic research agent with local data storage, enabling iterative research methodologies and high-quality outcomes.
• takashiishida/arxiv-latex-mcp: Facilitates precise interpretation of mathematical expressions in arXiv papers by processing LaTeX sources for Claude Desktop.
• JackKuo666/PubChem-MCP-Server: Facilitates AI-driven searches and retrieval of chemical compound data from PubChem via a streamlined MCP interface.
• HuaLuAI/CAD-MCP: CAD-MCP enables natural language-driven CAD operations across multiple software platforms, streamlining drawing tasks through intuitive text commands.
• danimal141/arxiv-search-mcp: Facilitates searching and retrieving academic papers from arXiv.org with customizable parameters.
• sebastien-le-paris/project-rules: Facilitates the integration of external tools and data sources with Cursor through the Model Context Protocol, enhancing AI project rule management and tool execution.
• openags/paper-search-mcp: Facilitates seamless academic paper search and download from multiple sources, enhancing LLM workflows with MCP integration.
• CoderiGenius/math-all-mcp: Facilitates precise mathematical computations via SSE for seamless integration with large language models.
• Darkroaster/pubmearch: Facilitates rapid insights into medical research dynamics through advanced PubMed literature analysis.
• cnosuke/mcp-wolfram-alpha: Facilitates high-precision computational queries and scientific data retrieval via Wolfram Alpha API for LLMs.
• Kryzo/mcp-europeana: Generate comprehensive research documents using Europeana's digital library sources, integrating with AI tools via MCP.
• ANewProfile/gbif-custom-mcp: Facilitates access to GBIF datasets via MCP servers, integrating with Claude Desktop for enhanced LLM context and BigQuery data retrieval.
• GDAmitha/chimerax-alphafold-mcp: ChimeraX-AlphaFold-MCP facilitates seamless integration between ChimeraX, AlphaFold, and Claude AI, enabling advanced molecular visualization and structural analysis through natural language commands.
• vitamin3615/uniprot-mcp-server: Facilitates language models in retrieving protein data from the UniProt database, supporting integration with Claude Desktop and other MCP-compatible AI applications.
• tis-abe-akira/mcp-study: A TypeScript-based MCP server offering a whimsical cowsay interface with random responses and multiple character modes.
• podaac/cmr-mcp: Integrates AI retrievals with NASA's Earthdata Catalog using the Model Context Protocol.
• djalal/quran-mcp-server: Facilitates interaction with the Quran.com API for verse search, translation, and tafsir through an MCP server.
• KunihiroS/google-patents-mcp: Facilitates Google Patents searches using SerpApi through an MCP server interface.
• jkingsman/qanon-mcp-server: Facilitates sociological research by providing AI-driven access to a dataset of Q-Anon posts for analysis and exploration.
• hogyzen12/lernean-lens: Facilitates collaborative reverse engineering of Solana binaries using Ghidra with MCP and eBPF extensions, integrating with Claude Desktop.
• oOo0oOo/lean-lsp-mcp: Facilitates agentic interaction with the Lean theorem prover using the Language Server Protocol.
• wheattoast11/openrouter-deep-research-mcp: Orchestrates AI-powered research using Claude and various OpenRouter models for comprehensive and adaptive research capabilities.
• jerpint/paperpal: Facilitates literature reviews by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.
• HappyAny/latex-mathml-mcp-server: Converts LaTeX mathematical expressions to MathML format using a lightweight MCP server implementation.
• pathintegral-institute/mcp-servers: Open source MCP servers designed to facilitate scientific research through customizable server configurations and tool integrations.
• botanicastudios/crossref-mcp: Facilitates seamless interaction with the Crossref API, enabling searches by title, author, and DOI retrieval.
• JackKuo666/semanticscholar-MCP-Server: Facilitates interaction with the Semantic Scholar API, enabling paper searches, author details retrieval, and citation management.
• adamrtalbot/mcp-nextflow: Facilitates Nextflow development and testing with a suite of tools for building, testing, and managing Nextflow environments.
• JackKuo666/Sci-Hub-MCP-Server: Facilitates AI-driven access and analysis of academic papers via Sci-Hub using an MCP interface.
• halllo/McpExperiments: A dotnet MCP server and client setup for local LLM integration, featuring time retrieval and OAuth server middleware experiments.
• reading-plus-ai/mcp-server-deep-research: Facilitates in-depth research by transforming questions into structured, well-cited reports using an MCP server.
• YuChenSSR/symbolica-mcp: Facilitates symbolic computation and quantum computing analysis within a containerized environment, integrating with AI for scientific and engineering applications.
• YuChenSSR/quantum-simulator-mcp: A Docker-based quantum circuit simulator implementing MCP for seamless integration with clients like Claude, featuring noise models and OpenQASM 2.0 support.
• Ray0907/mcp-arxiv: Facilitates seamless academic paper search and retrieval from arXiv for LLMs, bypassing complex HTML parsing.
• tejpalvirk/quantitativeresearch: Facilitates the management of quantitative research knowledge graphs, enabling structured representation and analysis of research data, hypotheses, and results.
• tejpalvirk/qualitativeresearch: Facilitates the management of qualitative research knowledge graphs, enabling structured representation and analysis of research data.
• zhaoyouj/mcp-slicer: Facilitates seamless interaction between 3D Slicer and model clients for medical image processing and scene manipulation using natural language.
• egtai/gmx-vmd-mcp: Facilitates molecular dynamics simulations and visualization by integrating GROMACS with VMD through a microservice architecture.
• clssck/researcher-mcp: A research assistant server that integrates with Cline and Claude Desktop, utilizing Perplexity AI for intelligent search, documentation retrieval, API discovery, and code modernization assistance.
• dexhunter/kaggle-mcp: Facilitates interaction with Kaggle APIs through a Model Context Protocol server, enabling note management and client notifications.
• JackKuo666/Google-Scholar-MCP-Server: Facilitates AI-driven academic research by enabling seamless access to Google Scholar papers and author information through a Model Context Protocol interface.
• jzhang17/prospect-research-mcp: A specialized MCP server for prospect research, offering semantic search, webpage scraping, and batch search processing on the Smithery Web infrastructure.
• jbdamask/mcp-nih-reporter: Facilitates conversational searches of NIH-funded research projects and publications via the NIH RePORTER API.
• JackKuo666/PubMed-MCP-Server: Facilitates AI-driven search and analysis of PubMed articles through a streamlined MCP interface.
• vrtejus/pymol-mcp: PyMOL-MCP enables seamless integration of PyMOL with Claude AI for interactive molecular visualization and analysis through natural language commands.
• edwardpwtsoi/mathjs-mcp: Facilitates mathematical calculations and derivative computations using MathJS.
• PhelanShao/pubchem-mcp-server: Facilitates AI-driven queries to the PubChem database for comprehensive chemical compound data retrieval.
• husqvaluna/spike-symbol-mcp-server: A Symbol MCP server facilitating integration with Symbol's open API for streamlined communication and data handling.
• JackKuo666/medRxiv-MCP-Server: Facilitates AI-driven searches and access to medRxiv preprints, enhancing research capabilities in health sciences.
• JackKuo666/bioRxiv-MCP-Server: Facilitates AI-driven searches and metadata retrieval of bioRxiv preprints through a streamlined MCP interface.
• goern/bundestag-mcp: Facilitates interaction with German Bundestag protocols through a Model Context Protocol server.
• khigashi1987/biopaper-mcp-search: Facilitates advanced search and analysis of biology papers using Europe PMC API, integrated with Claude Desktop for a comprehensive research assistant experience.
• lutzcc1/bonsai-mcp: Facilitates search queries on indexed data using Bonsai's Search cluster, enabling LLMs like Claude to perform efficient searches.
• suthio/brave-deep-research-mcp: Enhances Brave Search with Puppeteer-powered content extraction for comprehensive web research, allowing AI assistants to access detailed information beyond standard search results.
• riemannzeta/patent_mcp_server: Facilitates access to USPTO patent data through APIs, enabling integration with Claude Desktop for efficient patent search and retrieval.
• ProgramComputer/NASA-MCP-server: Facilitates AI model interactions with NASA's extensive data sources through a standardized interface.
• ameeralns/DeepResearchMCP: DeepResearch MCP is an intelligent research assistant that conducts iterative research and generates comprehensive reports using the Model Context Protocol.
• huanongfish/simple-pubmed: Access PubMed articles via the Entrez API, offering keyword search, abstracts, and full text for open access articles.
• huanongfish/arxiv-mcp: Facilitates AI-driven searches and access to arXiv papers via a streamlined MCP interface.
• huanongfish/pubmedmcp: Facilitates searching and retrieving biomedical literature from PubMed using MCP server capabilities.
• datalayer/earthdata-mcp-server: Facilitates efficient dataset discovery and retrieval from NASA Earth Data for geospatial analysis.
• JoshuaLelon/deep-research-mcp: A multi-agent research framework utilizing Python and MCP, featuring a FastMCP server for orchestrating AI agents in research tasks.
• KYBvWHxW/mcp-servers: A versatile MCP server system featuring specialized servers for basic algorithms, quantum simulation, neuromorphic computing, and entropy-associated memory.
• Cam10001110101/mcp-server-ollama-deep-researcher: Empowers AI assistants to conduct in-depth research using local LLMs through an iterative process of web search, summarization, and reflection.
• nguyenvanduocit/research-kit: Research Kit enhances AI model capabilities by integrating with development tools like Jira and GitLab, automating workflows and managing documentation through natural language interactions.
• GreatAuk/mcp-weather: A TypeScript starter template for building production-ready MCP servers with tools for fast development and automated version management.
• h-yanagawa/research-mcp-server: Facilitates survey data retrieval and page creation in Notion through an MCP server.
• nahmanmate/code-research-mcp-server: A Model Context Protocol server that facilitates the search and retrieval of programming resources from multiple developer platforms, enhancing LLM capabilities.
• DaInfernalCoder/perplexity-mcp: A research and documentation assistant leveraging Perplexity AI for intelligent query complexity detection and model routing.
• bmorphism/anti-bullshit-mcp-server: Analyzes claims, validates sources, and detects manipulation using diverse epistemological frameworks.
• qpd-v/mcp-DEEPwebresearch: An advanced MCP server designed for deep web research, featuring intelligent search queuing, enhanced content extraction, and real-time integration with Claude.
• adityak74/mcp-scholarly: Facilitates precise academic article searches through an MCP server with Arxiv integration.
• blake365/usgs-quakes-mcp: Facilitates natural language queries to access USGS Earthquake data via Claude Desktop.
• Jacck/mcp-ortools: Integrates Google's OR-Tools with Large Language Models for solving constraint satisfaction and optimization problems.
• lenwood/cfbd-mcp-server: Enables AI assistants to query and analyze comprehensive college football statistics using the CFBD API within Claude Desktop.
• andybrandt/mcp-simple-pubmed: Facilitates access to PubMed articles via the Entrez API, enabling keyword searches and retrieval of abstracts and full texts for open access articles.
• andybrandt/mcp-simple-arxiv: Facilitates LLMs to search and access scientific papers on arXiv, providing metadata and abstracts through an MCP server.
• blazickjp/arxiv-mcp-server: Facilitates AI-driven search and analysis of arXiv papers via a streamlined MCP interface.