Update Modules [26 January 2025, 15:43]

admin6 · admin6 · commit 0e17416b06e5 · 2025-01-26T15:45:13.000+01:00
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md
@@ -28,7 +28,7 @@ module load Autoconf/2.72-GCCcore-13.3.0
 |Autoconf/2.71-GCCcore-11.3.0|-|x|x|x|-|x|-|
 |Autoconf/2.71-GCCcore-11.2.0|-|x|x|x|-|x|-|
 |Autoconf/2.71-GCCcore-10.3.0|-|x|x|x|-|-|-|
-|Autoconf/2.71|-|x|x|x|-|x|x|
+|Autoconf/2.71|x|x|x|x|x|x|x|
 |Autoconf/2.69-GCCcore-10.2.0|-|x|x|x|-|-|-|
 |Autoconf/2.69-GCCcore-9.3.0|-|x|x|x|-|-|-|
 |Autoconf/2.69-GCCcore-8.3.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md
@@ -14,11 +14,12 @@ The overview below shows which Bonito installations are available per HPC-UGent
 To start using Bonito, load one of these modules using a `module load` command like:
 
 ```shell
-module load Bonito/0.1.0-foss-2019b-Python-3.7.4
+module load Bonito/0.8.1-foss-2023a-CUDA-12.1.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Bonito/0.8.1-foss-2023a-CUDA-12.1.1|-|-|x|-|-|-|-|
 |Bonito/0.1.0-foss-2019b-Python-3.7.4|-|x|-|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DeltaLake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DeltaLake.md
@@ -21,4 +21,4 @@ module load DeltaLake/0.15.1-gfbf-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|DeltaLake/0.15.1-gfbf-2023a|x|x|x|x|-|x|x|
+|DeltaLake/0.15.1-gfbf-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md
@@ -21,7 +21,7 @@ module load EasyBuild/4.9.4
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|EasyBuild/4.9.4|x|x|x|x|-|x|x|
+|EasyBuild/4.9.4|x|x|x|x|x|x|x|
 |EasyBuild/4.9.3|x|x|x|x|-|x|x|
 |EasyBuild/4.9.2|x|x|x|x|-|x|x|
 |EasyBuild/4.9.1|x|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md
@@ -21,7 +21,7 @@ module load Flask/2.3.3-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Flask/2.3.3-GCCcore-12.3.0|x|x|x|x|-|x|x|
+|Flask/2.3.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |Flask/2.2.2-GCCcore-11.3.0|-|x|x|x|-|-|-|
 |Flask/2.0.2-GCCcore-11.2.0|-|x|x|-|-|-|-|
 |Flask/1.1.4-GCCcore-10.3.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gradio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gradio.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+Gradio
+======
+
+# Available modules
+
+
+The overview below shows which Gradio installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using Gradio, load one of these modules using a `module load` command like:
+
+```shell
+module load Gradio/4.19.0-gfbf-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Gradio/4.19.0-gfbf-2023a|x|-|x|-|x|x|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md
@@ -14,12 +14,13 @@ The overview below shows which IDBA-UD installations are available per HPC-UGent
 To start using IDBA-UD, load one of these modules using a `module load` command like:
 
 ```shell
-module load IDBA-UD/1.1.3-GCC-11.2.0
+module load IDBA-UD/1.1.3-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|IDBA-UD/1.1.3-GCCcore-12.3.0|x|x|x|-|x|x|x|
 |IDBA-UD/1.1.3-GCC-11.2.0|-|x|x|-|-|-|-|
 |IDBA-UD/1.1.3-GCC-10.2.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md
@@ -21,5 +21,5 @@ module load Infernal/1.1.5-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Infernal/1.1.5-foss-2023a|-|x|x|x|x|x|x|
+|Infernal/1.1.5-foss-2023a|x|x|x|x|x|x|x|
 |Infernal/1.1.4-foss-2021b|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md
@@ -33,5 +33,5 @@ module load M4/1.4.19-GCCcore-13.3.0
 |M4/1.4.18-GCCcore-9.3.0|-|x|x|x|-|-|-|
 |M4/1.4.18-GCCcore-8.3.0|-|x|x|x|-|-|-|
 |M4/1.4.18-GCCcore-8.2.0|-|x|-|-|-|-|-|
-|M4/1.4.18|-|x|x|x|-|x|x|
+|M4/1.4.18|x|x|x|x|x|x|x|
 |M4/1.4.17|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MitoFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MitoFinder.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+MitoFinder
+==========
+
+# Available modules
+
+
+The overview below shows which MitoFinder installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using MitoFinder, load one of these modules using a `module load` command like:
+
+```shell
+module load MitoFinder/1.4.2-foss-2023a-Python-2.7.18
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|MitoFinder/1.4.2-foss-2023a-Python-2.7.18|x|x|x|-|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenNMT-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenNMT-py.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+OpenNMT-py
+==========
+
+# Available modules
+
+
+The overview below shows which OpenNMT-py installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using OpenNMT-py, load one of these modules using a `module load` command like:
+
+```shell
+module load OpenNMT-py/3.5.1-foss-2023a-CUDA-12.1.1
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|OpenNMT-py/3.5.1-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md
@@ -36,7 +36,7 @@ module load Python/3.12.3-GCCcore-13.3.0
 |Python/3.8.2-GCCcore-9.3.0|-|x|x|x|-|-|-|
 |Python/3.7.4-GCCcore-8.3.0|-|x|x|x|-|-|-|
 |Python/3.7.2-GCCcore-8.2.0|-|x|-|-|-|-|-|
-|Python/2.7.18-GCCcore-12.3.0|-|x|x|x|-|x|x|
+|Python/2.7.18-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |Python/2.7.18-GCCcore-12.2.0-bare|-|x|x|x|-|-|-|
 |Python/2.7.18-GCCcore-11.3.0-bare|-|x|x|x|-|-|-|
 |Python/2.7.18-GCCcore-11.2.0-bare|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bitsandbytes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bitsandbytes.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+bitsandbytes
+============
+
+# Available modules
+
+
+The overview below shows which bitsandbytes installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using bitsandbytes, load one of these modules using a `module load` command like:
+
+```shell
+module load bitsandbytes/0.43.3-foss-2023a-CUDA-12.1.1
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|bitsandbytes/0.43.3-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-remora.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-remora.md
@@ -14,11 +14,12 @@ The overview below shows which ont-remora installations are available per HPC-UG
 To start using ont-remora, load one of these modules using a `module load` command like:
 
 ```shell
-module load ont-remora/3.3.0-foss-2023a
+module load ont-remora/3.3.0-foss-2023a-CUDA-12.1.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ont-remora/3.3.0-foss-2023a-CUDA-12.1.1|-|-|x|-|-|-|-|
 |ont-remora/3.3.0-foss-2023a|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md
@@ -21,5 +21,5 @@ module load pod5-file-format/0.3.10-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|pod5-file-format/0.3.10-foss-2023a|-|x|x|x|-|x|x|
+|pod5-file-format/0.3.10-foss-2023a|-|x|x|x|x|x|x|
 |pod5-file-format/0.1.8-foss-2022a|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md
@@ -21,5 +21,5 @@ module load polars/0.20.2-gfbf-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|polars/0.20.2-gfbf-2023a|-|x|x|x|-|x|x|
+|polars/0.20.2-gfbf-2023a|-|x|x|x|x|x|x|
 |polars/0.15.6-foss-2022a|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md
@@ -14,12 +14,13 @@ The overview below shows which spaCy installations are available per HPC-UGent T
 To start using spaCy, load one of these modules using a `module load` command like:
 
 ```shell
-module load spaCy/3.7.4-foss-2022b
+module load spaCy/3.7.4-foss-2023a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|spaCy/3.7.4-foss-2023a|x|-|x|-|x|x|-|
 |spaCy/3.7.4-foss-2022b|-|x|x|x|-|-|-|
 |spaCy/3.4.4-foss-2022a|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tRNAscan-SE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tRNAscan-SE.md
@@ -21,5 +21,5 @@ module load tRNAscan-SE/2.0.12-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|tRNAscan-SE/2.0.12-foss-2023a|-|x|x|x|-|x|x|
+|tRNAscan-SE/2.0.12-foss-2023a|x|x|x|x|x|x|x|
 |tRNAscan-SE/2.0.12-GCC-11.2.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Sat, 25 Jan 2025 at 15:45:16 CET # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Sun, 26 Jan 2025 at 15:45:11 CET # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5
