Update Modules [1 April 2025, 15:43]

Author: admin6

mkdocs/docs/HPC/only/gent/available_software/data/json_data.json

@@ -21,4 +21,4 @@ module load AUGUSTUS/3.5.0-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|AUGUSTUS/3.5.0-foss-2023a|-|x|x|x|x|x|x|
+|AUGUSTUS/3.5.0-foss-2023a|x|x|x|x|x|x|x|

mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json

@@ -0,0 +1,25 @@
+---
+hide:
+  - toc
+---
+
+BBMap
+=====
+
+# Available modules
+
+
+The overview below shows which BBMap installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using BBMap, load one of these modules using a `module load` command like:
+
+```shell
+module load BBMap/39.19-GCC-13.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BBMap/39.19-GCC-13.3.0|x|x|x|x|x|x|x|
+|BBMap/39.19-GCC-12.3.0|x|x|x|x|x|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md

@@ -14,13 +14,14 @@ The overview below shows which BWA installations are available per HPC-UGent Tie
 To start using BWA, load one of these modules using a `module load` command like:
 
 ```shell
-module load BWA/0.7.18-GCCcore-13.2.0
+module load BWA/0.7.18-GCCcore-13.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BWA/0.7.18-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |BWA/0.7.18-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |BWA/0.7.17-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |BWA/0.7.17-GCCcore-11.3.0|-|-|-|-|-|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md

@@ -14,13 +14,14 @@ The overview below shows which Biopython installations are available per HPC-UGe
 To start using Biopython, load one of these modules using a `module load` command like:
 
 ```shell
-module load Biopython/1.84-foss-2023b
+module load Biopython/1.84-foss-2024a
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Biopython/1.84-foss-2024a|x|x|x|x|x|x|x|
 |Biopython/1.84-foss-2023b|x|x|x|x|x|x|x|
 |Biopython/1.83-foss-2023a|x|x|x|x|x|x|x|
 |Biopython/1.79-foss-2022a|-|-|-|-|-|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md

@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+Bismark
+=======
+
+# Available modules
+
+
+The overview below shows which Bismark installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using Bismark, load one of these modules using a `module load` command like:
+
+```shell
+module load Bismark/0.24.2-GCC-12.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Bismark/0.24.2-GCC-12.3.0|x|x|x|x|x|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md

@@ -14,11 +14,12 @@ The overview below shows which Boltz-1 installations are available per HPC-UGent
 To start using Boltz-1, load one of these modules using a `module load` command like:
 
 ```shell
-module load Boltz-1/0.4.1-foss-2023a
+module load Boltz-1/0.4.1-foss-2023a-CUDA-12.1.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Boltz-1/0.4.1-foss-2023a|x|x|x|-|x|x|x|
+|Boltz-1/0.4.1-foss-2023a-CUDA-12.1.1|x|-|x|-|x|x|-|
+|Boltz-1/0.4.1-foss-2023a|x|x|x|x|x|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md

@@ -14,11 +14,12 @@ The overview below shows which CapnProto installations are available per HPC-UGe
 To start using CapnProto, load one of these modules using a `module load` command like:
 
 ```shell
-module load CapnProto/1.0.1-GCCcore-12.3.0
+module load CapnProto/1.1.0-GCCcore-13.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|CapnProto/1.1.0-GCCcore-13.3.0|x|x|x|-|x|x|x|
 |CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|

mkdocs/docs/HPC/only/gent/available_software/detail/Boltz-1.md

@@ -14,13 +14,14 @@ The overview below shows which DIAMOND installations are available per HPC-UGent
 To start using DIAMOND, load one of these modules using a `module load` command like:
 
 ```shell
-module load DIAMOND/2.1.9-GCC-13.2.0
+module load DIAMOND/2.1.11-GCC-13.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|DIAMOND/2.1.11-GCC-13.3.0|x|x|x|x|x|x|x|
 |DIAMOND/2.1.9-GCC-13.2.0|x|x|x|x|x|-|-|
 |DIAMOND/2.1.8-GCC-12.3.0|x|x|x|x|x|x|x|
 |DIAMOND/2.1.8-GCC-12.2.0|-|-|-|-|-|x|x|