Update Modules [18 February 2025, 15:43]

admin6 · admin6 · commit 8e8e71cbf1b1 · 2025-02-18T15:45:13.000+01:00
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md
@@ -22,7 +22,7 @@ module load BWA/0.7.17-iccifort-2019.5.281
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |BWA/0.7.17-iccifort-2019.5.281|-|x|-|-|-|-|-|
-|BWA/0.7.17-GCCcore-12.3.0|x|x|x|x|-|x|x|
+|BWA/0.7.17-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |BWA/0.7.17-GCCcore-12.2.0|-|x|x|x|-|-|-|
 |BWA/0.7.17-GCCcore-11.3.0|-|x|x|x|-|x|-|
 |BWA/0.7.17-GCCcore-11.2.0|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md
@@ -21,5 +21,5 @@ module load Cbc/2.10.11-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Cbc/2.10.11-foss-2023a|-|x|x|x|-|x|x|
+|Cbc/2.10.11-foss-2023a|-|x|x|x|x|x|x|
 |Cbc/2.10.5-foss-2022b|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md
@@ -21,5 +21,5 @@ module load Cgl/0.60.8-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Cgl/0.60.8-foss-2023a|-|x|x|x|-|x|x|
+|Cgl/0.60.8-foss-2023a|-|x|x|x|x|x|x|
 |Cgl/0.60.7-foss-2022b|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md
@@ -21,6 +21,6 @@ module load Clp/1.17.9-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Clp/1.17.9-foss-2023a|-|x|x|x|-|x|x|
+|Clp/1.17.9-foss-2023a|-|x|x|x|x|x|x|
 |Clp/1.17.8-foss-2022b|-|x|x|x|-|-|-|
 |Clp/1.17.7-foss-2021b|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md
@@ -21,6 +21,6 @@ module load CoinUtils/2.11.10-GCC-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|CoinUtils/2.11.10-GCC-12.3.0|x|x|x|x|-|x|x|
+|CoinUtils/2.11.10-GCC-12.3.0|x|x|x|x|x|x|x|
 |CoinUtils/2.11.9-GCC-12.2.0|-|x|x|x|-|-|-|
 |CoinUtils/2.11.6-GCC-11.2.0|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphAligner.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphAligner.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+GraphAligner
+============
+
+# Available modules
+
+
+The overview below shows which GraphAligner installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using GraphAligner, load one of these modules using a `module load` command like:
+
+```shell
+module load GraphAligner/1.0.20-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|GraphAligner/1.0.20-foss-2023a|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Leptonica.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Leptonica.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+Leptonica
+=========
+
+# Available modules
+
+
+The overview below shows which Leptonica installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using Leptonica, load one of these modules using a `module load` command like:
+
+```shell
+module load Leptonica/1.85.0-GCCcore-13.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Leptonica/1.85.0-GCCcore-13.3.0|-|x|x|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md
@@ -22,7 +22,7 @@ module load MUMPS/5.6.1-gomkl-2023a-metis-seq
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |MUMPS/5.6.1-gomkl-2023a-metis-seq|-|x|x|x|-|x|x|
-|MUMPS/5.6.1-foss-2023a-metis|-|x|x|x|-|x|x|
+|MUMPS/5.6.1-foss-2023a-metis|-|x|x|x|x|x|x|
 |MUMPS/5.6.1-foss-2022b-metis|-|x|x|x|-|-|-|
 |MUMPS/5.5.1-foss-2022a-metis|-|x|x|x|-|-|-|
 |MUMPS/5.4.1-intel-2021b-metis|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MashMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MashMap.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+MashMap
+=======
+
+# Available modules
+
+
+The overview below shows which MashMap installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using MashMap, load one of these modules using a `module load` command like:
+
+```shell
+module load MashMap/3.1.3-GCC-12.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|MashMap/3.1.3-GCC-12.3.0|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md
@@ -21,6 +21,6 @@ module load Osi/0.108.9-GCC-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Osi/0.108.9-GCC-12.3.0|-|x|x|x|-|x|x|
+|Osi/0.108.9-GCC-12.3.0|-|x|x|x|x|x|x|
 |Osi/0.108.8-GCC-12.2.0|-|x|x|x|-|-|-|
 |Osi/0.108.7-GCC-11.2.0|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md
@@ -21,5 +21,5 @@ module load PuLP/2.8.0-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|PuLP/2.8.0-foss-2023a|-|x|x|x|-|x|x|
+|PuLP/2.8.0-foss-2023a|-|x|x|x|x|x|x|
 |PuLP/2.7.0-foss-2022b|-|x|x|x|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Verkko.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Verkko.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+Verkko
+======
+
+# Available modules
+
+
+The overview below shows which Verkko installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using Verkko, load one of these modules using a `module load` command like:
+
+```shell
+module load Verkko/2.2.1-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Verkko/2.2.1-foss-2023a|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md
@@ -14,11 +14,12 @@ The overview below shows which Winnowmap installations are available per HPC-UGe
 To start using Winnowmap, load one of these modules using a `module load` command like:
 
 ```shell
-module load Winnowmap/1.0-GCC-8.3.0
+module load Winnowmap/2.03-GCCcore-12.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Winnowmap/2.03-GCCcore-12.3.0|-|x|x|x|x|x|x|
 |Winnowmap/1.0-GCC-8.3.0|-|x|-|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libnsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libnsl.md
@@ -21,4 +21,4 @@ module load libnsl/2.0.1-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|libnsl/2.0.1-GCCcore-12.3.0|-|x|x|x|-|x|x|
+|libnsl/2.0.1-GCCcore-12.3.0|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sdsl-lite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sdsl-lite.md
@@ -22,3 +22,4 @@ module load sdsl-lite/2.1.1-foss-2023a
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |sdsl-lite/2.1.1-foss-2023a|x|x|x|x|x|x|x|
+|sdsl-lite/2.0.3-GCCcore-12.3.0|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md
@@ -21,7 +21,7 @@ module load seqtk/1.4-GCC-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|seqtk/1.4-GCC-12.3.0|-|x|x|x|-|x|x|
+|seqtk/1.4-GCC-12.3.0|-|x|x|x|x|x|x|
 |seqtk/1.3-GCC-11.2.0|-|x|x|-|-|-|-|
 |seqtk/1.3-GCC-10.2.0|-|x|x|x|-|-|-|
 |seqtk/1.3-GCC-8.3.0|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md
@@ -21,7 +21,7 @@ module load snakemake/8.4.2-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|snakemake/8.4.2-foss-2023a|-|x|x|x|-|x|x|
+|snakemake/8.4.2-foss-2023a|-|x|x|x|x|x|x|
 |snakemake/7.32.3-foss-2022b|-|x|x|x|-|-|-|
 |snakemake/7.22.0-foss-2022a|-|x|x|x|-|-|-|
 |snakemake/7.18.2-foss-2021b|-|x|x|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tesseract.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tesseract.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+tesseract
+=========
+
+# Available modules
+
+
+The overview below shows which tesseract installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using tesseract, load one of these modules using a `module load` command like:
+
+```shell
+module load tesseract/5.5.0-GCCcore-13.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|shinx|skitty|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|tesseract/5.5.0-GCCcore-13.3.0|-|x|x|x|-|x|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar07.gastly.os
 altloginhost: gligar08.gastly.os
-modules_last_updated: Sat, 15 Feb 2025 at 15:45:20 CET # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Tue, 18 Feb 2025 at 15:45:11 CET # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5
