Merge pull request hpcugent#989 from hpcugentbot/auto_update_modules_2025-07-29_15-43

boegel · web-flow · commit bb4687080283 · 2025-07-30T08:03:28.000+02:00
Auto Update Modules [29 July 2025, 15:43]
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md
@@ -21,6 +21,6 @@ module load ArchR/1.0.3-foss-2023b-R-4.4.1
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|ArchR/1.0.3-foss-2023b-R-4.4.1|x|-|x|x|x|x|x|
+|ArchR/1.0.3-foss-2023b-R-4.4.1|x|x|x|x|x|x|x|
 |ArchR/1.0.2-foss-2023a-R-4.3.2|-|x|-|x|-|x|x|
 |ArchR/1.0.2-20220704-foss-2023a-R-4.3.2|-|-|-|-|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md
@@ -32,3 +32,4 @@ module load GROMACS/2024.4-foss-2023b-PLUMED-2.9.2
 |GROMACS/2024.1-foss-2023b|-|-|x|-|x|x|x|
 |GROMACS/2023.3-foss-2023a-PLUMED-2.9.0|-|-|x|-|x|x|x|
 |GROMACS/2023.3-foss-2023a|-|-|x|-|x|x|x|
+|GROMACS/2021.0-foss-2023a-20250409-constant-pH|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md
@@ -14,13 +14,14 @@ The overview below shows which Go installations are available per HPC-UGent Tier
 To start using Go, load one of these modules using a `module load` command like:
 
 ```shell
-module load Go/1.22.1
+module load Go/1.23.6
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Go/1.23.6|x|x|x|x|x|x|x|
 |Go/1.22.1|x|x|x|x|x|x|x|
 |Go/1.21.6|x|x|-|x|-|x|x|
 |Go/1.21.2|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+InterProScan
+============
+
+# Available modules
+
+
+The overview below shows which InterProScan installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using InterProScan, load one of these modules using a `module load` command like:
+
+```shell
+module load InterProScan/5.73-104.0-GCC-13.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|InterProScan/5.73-104.0-GCC-13.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan_data.md b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan_data.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+InterProScan_data
+=================
+
+# Available modules
+
+
+The overview below shows which InterProScan_data installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using InterProScan_data, load one of these modules using a `module load` command like:
+
+```shell
+module load InterProScan_data/5.73-104.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|InterProScan_data/5.73-104.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md
@@ -21,5 +21,5 @@ module load MACS2/2.2.9.1-foss-2023b
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|MACS2/2.2.9.1-foss-2023b|x|-|x|x|x|x|x|
+|MACS2/2.2.9.1-foss-2023b|x|x|x|x|x|x|x|
 |MACS2/2.2.9.1-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md
@@ -14,11 +14,12 @@ The overview below shows which MATLAB installations are available per HPC-UGent
 To start using MATLAB, load one of these modules using a `module load` command like:
 
 ```shell
-module load MATLAB/2022b-r5
+module load MATLAB/2023a-r1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|MATLAB/2023a-r1|x|x|x|x|x|x|x|
 |MATLAB/2022b-r5|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md
@@ -21,4 +21,4 @@ module load Mono/6.12.0.199-GCCcore-13.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Mono/6.12.0.199-GCCcore-13.3.0|x|-|x|x|x|x|x|
+|Mono/6.12.0.199-GCCcore-13.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MorphoSONIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MorphoSONIC.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+MorphoSONIC
+===========
+
+# Available modules
+
+
+The overview below shows which MorphoSONIC installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using MorphoSONIC, load one of these modules using a `module load` command like:
+
+```shell
+module load MorphoSONIC/1.0-20240110-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|MorphoSONIC/1.0-20240110-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md
@@ -14,13 +14,14 @@ The overview below shows which Perl-bundle-CPAN installations are available per
 To start using Perl-bundle-CPAN, load one of these modules using a `module load` command like:
 
 ```shell
-module load Perl-bundle-CPAN/5.38.2-GCCcore-13.3.0
+module load Perl-bundle-CPAN/5.40.0-GCCcore-14.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Perl-bundle-CPAN/5.40.0-GCCcore-14.2.0|x|x|-|x|-|x|x|
 |Perl-bundle-CPAN/5.38.2-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |Perl-bundle-CPAN/5.38.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PySONIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PySONIC.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+PySONIC
+=======
+
+# Available modules
+
+
+The overview below shows which PySONIC installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using PySONIC, load one of these modules using a `module load` command like:
+
+```shell
+module load PySONIC/1.0-20250519-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|PySONIC/1.0-20250519-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SearchGUI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SearchGUI.md
@@ -21,4 +21,4 @@ module load SearchGUI/4.3.9-GCCcore-13.3.0-Java-11
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|SearchGUI/4.3.9-GCCcore-13.3.0-Java-11|x|-|x|x|x|x|x|
+|SearchGUI/4.3.9-GCCcore-13.3.0-Java-11|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/chromVARmotifs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/chromVARmotifs.md
@@ -21,5 +21,5 @@ module load chromVARmotifs/0.2.0-foss-2023b-R-4.4.1
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|chromVARmotifs/0.2.0-foss-2023b-R-4.4.1|x|-|x|x|x|x|x|
+|chromVARmotifs/0.2.0-foss-2023b-R-4.4.1|x|x|x|x|x|x|x|
 |chromVARmotifs/0.2.0-foss-2023a-R-4.3.2|x|x|-|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md
@@ -14,12 +14,13 @@ The overview below shows which git-lfs installations are available per HPC-UGent
 To start using git-lfs, load one of these modules using a `module load` command like:
 
 ```shell
-module load git-lfs/3.5.1
+module load git-lfs/3.6.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|git-lfs/3.6.1|x|x|x|x|x|x|x|
 |git-lfs/3.5.1|x|x|x|x|x|x|x|
 |git-lfs/3.2.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md
@@ -14,13 +14,14 @@ The overview below shows which groff installations are available per HPC-UGent T
 To start using groff, load one of these modules using a `module load` command like:
 
 ```shell
-module load groff/1.23.0-GCCcore-13.3.0
+module load groff/1.23.0-GCCcore-14.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|groff/1.23.0-GCCcore-14.2.0|x|x|x|x|x|x|x|
 |groff/1.23.0-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |groff/1.23.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |groff/1.22.4-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iGUIDE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iGUIDE.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+iGUIDE
+======
+
+# Available modules
+
+
+The overview below shows which iGUIDE installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using iGUIDE, load one of these modules using a `module load` command like:
+
+```shell
+module load iGUIDE/1.2.0-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|iGUIDE/1.2.0-foss-2023a|-|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md
@@ -14,12 +14,13 @@ The overview below shows which libgd installations are available per HPC-UGent T
 To start using libgd, load one of these modules using a `module load` command like:
 
 ```shell
-module load libgd/2.3.3-GCCcore-13.2.0
+module load libgd/2.3.3-GCCcore-13.3.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|libgd/2.3.3-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |libgd/2.3.3-GCCcore-13.2.0|-|x|x|x|x|x|x|
 |libgd/2.3.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/multiprocess.md b/mkdocs/docs/HPC/only/gent/available_software/detail/multiprocess.md
@@ -22,3 +22,4 @@ module load multiprocess/0.70.16-gfbf-2023b
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |multiprocess/0.70.16-gfbf-2023b|x|x|x|x|x|x|x|
+|multiprocess/0.70.15-gfbf-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md
@@ -21,5 +21,5 @@ module load presto/1.0.0-20230501-foss-2023b-R-4.4.1
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|presto/1.0.0-20230501-foss-2023b-R-4.4.1|x|-|x|x|x|x|x|
+|presto/1.0.0-20230501-foss-2023b-R-4.4.1|x|x|x|x|x|x|x|
 |presto/1.0.0-20230501-foss-2023a-R-4.3.2|-|x|-|x|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md
@@ -14,12 +14,13 @@ The overview below shows which rclone installations are available per HPC-UGent
 To start using rclone, load one of these modules using a `module load` command like:
 
 ```shell
-module load rclone/1.66.0
+module load rclone/1.68.1
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|rclone/1.68.1|x|x|x|x|x|x|x|
 |rclone/1.66.0|x|-|-|x|-|x|x|
 |rclone/1.65.2|x|x|-|x|-|x|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar09.gastly.os
 altloginhost: gligar10.gastly.os
-modules_last_updated: Sat, 05 Jul 2025 at 15:45:39 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Tue, 29 Jul 2025 at 15:45:38 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5
