Update Modules [17 June 2025, 15:43]

admin6 · admin6 · commit df941ec14bc9 · 2025-06-17T15:45:44.000+02:00
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md
@@ -14,12 +14,13 @@ The overview below shows which BCFtools installations are available per HPC-UGen
 To start using BCFtools, load one of these modules using a `module load` command like:
 
 ```shell
-module load BCFtools/1.18-GCC-12.3.0
+module load BCFtools/1.19-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BCFtools/1.19-GCC-13.2.0|x|x|x|x|x|x|x|
 |BCFtools/1.18-GCC-12.3.0|x|x|x|x|x|x|x|
 |BCFtools/1.17-GCC-12.2.0|-|-|-|-|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DeltaLake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DeltaLake.md
@@ -14,11 +14,12 @@ The overview below shows which DeltaLake installations are available per HPC-UGe
 To start using DeltaLake, load one of these modules using a `module load` command like:
 
 ```shell
-module load DeltaLake/0.15.1-gfbf-2023a
+module load DeltaLake/0.25.5-gfbf-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|DeltaLake/0.25.5-gfbf-2023b|x|x|x|x|x|x|x|
 |DeltaLake/0.15.1-gfbf-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LIQA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LIQA.md
@@ -14,11 +14,12 @@ The overview below shows which LIQA installations are available per HPC-UGent Ti
 To start using LIQA, load one of these modules using a `module load` command like:
 
 ```shell
-module load LIQA/1.3.4-foss-2023a
+module load LIQA/1.3.4-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|LIQA/1.3.4-foss-2023b|x|x|x|x|x|x|x|
 |LIQA/1.3.4-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md
@@ -14,11 +14,12 @@ The overview below shows which Longshot installations are available per HPC-UGen
 To start using Longshot, load one of these modules using a `module load` command like:
 
 ```shell
-module load Longshot/1.0.0-GCCcore-12.3.0
+module load Longshot/1.0.0-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Longshot/1.0.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |Longshot/1.0.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md
@@ -14,13 +14,14 @@ The overview below shows which Rust installations are available per HPC-UGent Ti
 To start using Rust, load one of these modules using a `module load` command like:
 
 ```shell
-module load Rust/1.78.0-GCCcore-13.3.0
+module load Rust/1.86.0-GCCcore-13.2.0-nightly
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Rust/1.86.0-GCCcore-13.2.0-nightly|x|x|x|x|x|x|x|
 |Rust/1.78.0-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |Rust/1.76.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |Rust/1.75.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md
@@ -14,11 +14,12 @@ The overview below shows which Subread installations are available per HPC-UGent
 To start using Subread, load one of these modules using a `module load` command like:
 
 ```shell
-module load Subread/2.0.6-GCC-12.3.0
+module load Subread/2.1.1-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Subread/2.1.1-GCC-13.2.0|x|x|x|x|x|x|x|
 |Subread/2.0.6-GCC-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/annovar.md b/mkdocs/docs/HPC/only/gent/available_software/detail/annovar.md
@@ -14,11 +14,12 @@ The overview below shows which annovar installations are available per HPC-UGent
 To start using annovar, load one of these modules using a `module load` command like:
 
 ```shell
-module load annovar/20200607-GCCcore-12.3.0
+module load annovar/20200607-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|annovar/20200607-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |annovar/20200607-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md
@@ -14,11 +14,12 @@ The overview below shows which gffread installations are available per HPC-UGent
 To start using gffread, load one of these modules using a `module load` command like:
 
 ```shell
-module load gffread/0.12.7-GCCcore-12.3.0
+module load gffread/0.12.7-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|gffread/0.12.7-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |gffread/0.12.7-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md
@@ -22,4 +22,5 @@ module load minimap2/2.29-GCCcore-13.3.0
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |minimap2/2.29-GCCcore-13.3.0|x|x|x|x|x|x|x|
+|minimap2/2.28-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |minimap2/2.26-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md
@@ -21,5 +21,5 @@ module load openpyxl/3.1.2-GCCcore-13.2.0
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|openpyxl/3.1.2-GCCcore-13.2.0|-|x|x|x|x|-|-|
+|openpyxl/3.1.2-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |openpyxl/3.1.2-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md
@@ -14,11 +14,12 @@ The overview below shows which polars installations are available per HPC-UGent
 To start using polars, load one of these modules using a `module load` command like:
 
 ```shell
-module load polars/0.20.2-gfbf-2023a
+module load polars/1.28.1-gfbf-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|polars/1.28.1-gfbf-2023b|x|x|x|x|x|x|x|
 |polars/0.20.2-gfbf-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scNanoGPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scNanoGPS.md
@@ -14,11 +14,12 @@ The overview below shows which scNanoGPS installations are available per HPC-UGe
 To start using scNanoGPS, load one of these modules using a `module load` command like:
 
 ```shell
-module load scNanoGPS/1.1-foss-2023a
+module load scNanoGPS/2.0-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|scNanoGPS/2.0-foss-2023b|x|x|x|x|x|x|x|
 |scNanoGPS/1.1-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md
@@ -14,11 +14,12 @@ The overview below shows which spoa installations are available per HPC-UGent Ti
 To start using spoa, load one of these modules using a `module load` command like:
 
 ```shell
-module load spoa/4.1.0-GCC-12.3.0
+module load spoa/4.1.0-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|spoa/4.1.0-GCC-13.2.0|x|x|x|x|x|x|x|
 |spoa/4.1.0-GCC-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tabix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tabix.md
@@ -14,11 +14,12 @@ The overview below shows which tabix installations are available per HPC-UGent T
 To start using tabix, load one of these modules using a `module load` command like:
 
 ```shell
-module load tabix/0.2.6-GCCcore-12.3.0
+module load tabix/0.2.6-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|tabix/0.2.6-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |tabix/0.2.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar09.gastly.os
 altloginhost: gligar10.gastly.os
-modules_last_updated: Fri, 13 Jun 2025 at 15:45:45 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Tue, 17 Jun 2025 at 15:45:42 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5
