Merge pull request hpcugent#941 from hpcugentbot/auto_update_modules_2025-05-22_15-43

boegel · web-flow · commit f2f4cb633912 · 2025-05-22T17:42:32.000+02:00
Auto Update Modules [22 May 2025, 15:43]
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md
@@ -21,4 +21,4 @@ module load ACTC/1.1-GCCcore-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|ACTC/1.1-GCCcore-12.3.0|-|-|x|-|x|-|-|
+|ACTC/1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md
@@ -22,3 +22,4 @@ module load AlphaPulldown/2.0.3-foss-2023a-CUDA-12.1.1
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |AlphaPulldown/2.0.3-foss-2023a-CUDA-12.1.1|x|-|x|-|x|x|-|
+|AlphaPulldown/2.0.3-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md
@@ -21,7 +21,7 @@ module load Clang/18.1.8-GCCcore-13.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|Clang/18.1.8-GCCcore-13.3.0|x|-|x|x|x|x|x|
+|Clang/18.1.8-GCCcore-13.3.0|x|x|x|x|x|x|x|
 |Clang/17.0.6-GCCcore-13.2.0|x|x|x|x|x|x|x|
 |Clang/17.0.0_20230515-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|x|-|
 |Clang/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md
@@ -14,13 +14,14 @@ The overview below shows which DendroPy installations are available per HPC-UGen
 To start using DendroPy, load one of these modules using a `module load` command like:
 
 ```shell
-module load DendroPy/4.6.1-GCCcore-12.3.0
+module load DendroPy/5.0.1-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|DendroPy/5.0.1-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |DendroPy/4.5.2-GCCcore-12.3.0-Python-2.7.18|x|x|x|-|x|x|x|
 |DendroPy/4.5.2-GCCcore-11.3.0|-|-|-|-|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md
@@ -22,4 +22,4 @@ module load FLTK/1.3.9-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |FLTK/1.3.9-GCCcore-13.2.0|-|x|x|x|x|x|x|
-|FLTK/1.3.8-GCCcore-12.3.0|-|-|x|-|x|-|-|
+|FLTK/1.3.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md
@@ -29,5 +29,6 @@ module load Java/21.0.5
 |Java/17(@Java/17.0.6)|x|x|x|x|x|x|x|
 |Java/13.0.2|-|-|x|-|x|-|-|
 |Java/13(@Java/13.0.2)|-|-|x|-|x|-|-|
+|Java/11.0.27|x|x|x|x|x|x|x|
 |Java/11.0.20|x|x|x|x|x|x|x|
 |Java/11(@Java/11.0.20)|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md
@@ -22,4 +22,5 @@ module load MAFFT/7.526-GCC-13.3.0-with-extensions
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |MAFFT/7.526-GCC-13.3.0-with-extensions|x|x|x|x|x|x|x|
+|MAFFT/7.526-GCC-13.2.0-with-extensions|-|x|-|-|-|-|-|
 |MAFFT/7.520-GCC-12.3.0-with-extensions|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md
@@ -21,4 +21,4 @@ module load POV-Ray/3.7.0.10-GCC-12.3.0
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|POV-Ray/3.7.0.10-GCC-12.3.0|-|-|x|-|x|-|-|
+|POV-Ray/3.7.0.10-GCC-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md
@@ -14,11 +14,12 @@ The overview below shows which Parsl installations are available per HPC-UGent T
 To start using Parsl, load one of these modules using a `module load` command like:
 
 ```shell
-module load Parsl/2024.4.22-GCCcore-12.3.0
+module load Parsl/2024.4.22-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Parsl/2024.4.22-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |Parsl/2024.4.22-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md
@@ -14,11 +14,12 @@ The overview below shows which QIIME2 installations are available per HPC-UGent
 To start using QIIME2, load one of these modules using a `module load` command like:
 
 ```shell
-module load QIIME2/2024.10.1-foss-2023a-amplicon
+module load QIIME2/2024.10.1-foss-2023b-amplicon
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|QIIME2/2024.10.1-foss-2023b-amplicon|-|x|-|-|-|-|-|
 |QIIME2/2024.10.1-foss-2023a-amplicon|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Uni-Core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Uni-Core.md
@@ -22,3 +22,4 @@ module load Uni-Core/0.0.3-foss-2023a-CUDA-12.1.1
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |Uni-Core/0.0.3-foss-2023a-CUDA-12.1.1|x|-|x|-|x|x|-|
+|Uni-Core/0.0.3-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md
@@ -14,11 +14,12 @@ The overview below shows which UniFrac installations are available per HPC-UGent
 To start using UniFrac, load one of these modules using a `module load` command like:
 
 ```shell
-module load UniFrac/1.4-foss-2023a
+module load UniFrac/1.4-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|UniFrac/1.4-foss-2023b|-|x|-|-|-|-|-|
 |UniFrac/1.4-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md
@@ -21,4 +21,4 @@ module load VMD/1.9.4a57-foss-2023a
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
-|VMD/1.9.4a57-foss-2023a|-|-|x|-|x|-|-|
+|VMD/1.9.4a57-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md
@@ -14,11 +14,12 @@ The overview below shows which VSEARCH installations are available per HPC-UGent
 To start using VSEARCH, load one of these modules using a `module load` command like:
 
 ```shell
-module load VSEARCH/2.25.0-GCC-12.3.0
+module load VSEARCH/2.30.0-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|VSEARCH/2.30.0-GCC-13.2.0|-|x|-|-|-|-|-|
 |VSEARCH/2.25.0-GCC-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md
@@ -14,12 +14,13 @@ The overview below shows which alsa-lib installations are available per HPC-UGen
 To start using alsa-lib, load one of these modules using a `module load` command like:
 
 ```shell
-module load alsa-lib/1.2.9-GCCcore-12.3.0
+module load alsa-lib/1.2.11-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|alsa-lib/1.2.11-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |alsa-lib/1.2.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |alsa-lib/1.2.8-GCCcore-11.3.0|-|-|-|-|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md
@@ -14,11 +14,12 @@ The overview below shows which attr installations are available per HPC-UGent Ti
 To start using attr, load one of these modules using a `module load` command like:
 
 ```shell
-module load attr/2.5.1-GCCcore-12.3.0
+module load attr/2.5.2-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|attr/2.5.2-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |attr/2.5.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cramjam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cramjam.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+cramjam
+=======
+
+# Available modules
+
+
+The overview below shows which cramjam installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using cramjam, load one of these modules using a `module load` command like:
+
+```shell
+module load cramjam/2.9.0-GCCcore-12.3.0
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|cramjam/2.9.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md
@@ -14,12 +14,13 @@ The overview below shows which cutadapt installations are available per HPC-UGen
 To start using cutadapt, load one of these modules using a `module load` command like:
 
 ```shell
-module load cutadapt/4.9-GCCcore-12.3.0
+module load cutadapt/5.0-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|cutadapt/5.0-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |cutadapt/4.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
 |cutadapt/1.18-GCCcore-12.3.0-Python-2.7.18|x|x|x|-|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md
@@ -14,11 +14,12 @@ The overview below shows which gffutils installations are available per HPC-UGen
 To start using gffutils, load one of these modules using a `module load` command like:
 
 ```shell
-module load gffutils/0.13-foss-2023a
+module load gffutils/0.13-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|gffutils/0.13-foss-2023b|-|x|-|-|-|-|-|
 |gffutils/0.13-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nose3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nose3.md
@@ -14,11 +14,12 @@ The overview below shows which nose3 installations are available per HPC-UGent T
 To start using nose3, load one of these modules using a `module load` command like:
 
 ```shell
-module load nose3/1.3.8-GCCcore-12.3.0
+module load nose3/1.3.8-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|nose3/1.3.8-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |nose3/1.3.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md
@@ -22,4 +22,5 @@ module load pigz/2.8-GCCcore-13.3.0
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |pigz/2.8-GCCcore-13.3.0|x|x|x|x|x|x|x|
+|pigz/2.8-GCCcore-13.2.0|-|x|-|-|-|-|-|
 |pigz/2.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md
@@ -14,12 +14,13 @@ The overview below shows which scikit-bio installations are available per HPC-UG
 To start using scikit-bio, load one of these modules using a `module load` command like:
 
 ```shell
-module load scikit-bio/0.6.0-foss-2023a
+module load scikit-bio/0.6.2-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|scikit-bio/0.6.2-foss-2023b|-|x|-|-|-|-|-|
 |scikit-bio/0.6.0-foss-2023a|x|x|x|x|x|x|x|
 |scikit-bio/0.5.9-foss-2023a|-|-|-|-|-|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md
@@ -14,11 +14,12 @@ The overview below shows which umap-learn installations are available per HPC-UG
 To start using umap-learn, load one of these modules using a `module load` command like:
 
 ```shell
-module load umap-learn/0.5.5-foss-2023a
+module load umap-learn/0.5.7-foss-2023b
 ```
 
 *(This data was automatically generated on {{modules_last_updated}})*  
 
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|umap-learn/0.5.7-foss-2023b|-|x|-|-|-|-|-|
 |umap-learn/0.5.5-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md
@@ -22,4 +22,4 @@ module load xprop/1.2.7-GCCcore-13.2.0
 | |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |xprop/1.2.7-GCCcore-13.2.0|-|x|x|x|x|x|x|
-|xprop/1.2.6-GCCcore-12.3.0|-|-|x|-|x|-|-|
+|xprop/1.2.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/yacrd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/yacrd.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+yacrd
+=====
+
+# Available modules
+
+
+The overview below shows which yacrd installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
+
+To start using yacrd, load one of these modules using a `module load` command like:
+
+```shell
+module load yacrd/1.0.0-foss-2023a
+```
+
+*(This data was automatically generated on {{modules_last_updated}})*  
+
+| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|yacrd/1.0.0-foss-2023a|x|x|x|x|x|x|x|
diff --git a/mkdocs/extra/gent.yml b/mkdocs/extra/gent.yml
@@ -16,7 +16,7 @@ hpcname: hpcugent
 loginnode: login.hpc.ugent.be
 loginhost: gligar09.gastly.os
 altloginhost: gligar10.gastly.os
-modules_last_updated: Wed, 21 May 2025 at 15:45:44 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
+modules_last_updated: Thu, 22 May 2025 at 15:45:44 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
 # get these with ssh-keyscan gligar01.ugent.be > file
 # ssh-keygen -l -f file
 # ssh-keygen -l -f file -E md5
