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Original file line number Diff line number Diff line change 1+ ---
2+ hide :
3+ - toc
4+ ---
5+
6+ BBMap
7+ =====
8+
9+ # Available modules
10+
11+
12+ The overview below shows which BBMap installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
13+
14+ To start using BBMap, load one of these modules using a ` module load ` command like:
15+
16+ ``` shell
17+ module load BBMap/39.19-GCC-13.3.0
18+ ```
19+
20+ * (This data was automatically generated on {{modules_last_updated}})*
21+
22+ | | accelgor| doduo| donphan| gallade| joltik| litleo| shinx|
23+ | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | BBMap/39.19-GCC-13.3.0| x| x| x| -| x| x| x|
Original file line number Diff line number Diff line change @@ -14,13 +14,14 @@ The overview below shows which BWA installations are available per HPC-UGent Tie
1414To start using BWA, load one of these modules using a ` module load ` command like:
1515
1616``` shell
17- module load BWA/0.7.18-GCCcore-13.2 .0
17+ module load BWA/0.7.18-GCCcore-13.3 .0
1818```
1919
2020* (This data was automatically generated on {{modules_last_updated}})*
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2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | BWA/0.7.18-GCCcore-13.3.0| x| x| x| -| x| x| x|
2425| BWA/0.7.18-GCCcore-13.2.0| x| x| x| x| x| x| x|
2526| BWA/0.7.17-GCCcore-12.3.0| x| x| x| x| x| x| x|
2627| BWA/0.7.17-GCCcore-11.3.0| -| -| -| -| -| x| x|
Original file line number Diff line number Diff line change @@ -14,13 +14,14 @@ The overview below shows which Biopython installations are available per HPC-UGe
1414To start using Biopython, load one of these modules using a ` module load ` command like:
1515
1616``` shell
17- module load Biopython/1.84-foss-2023b
17+ module load Biopython/1.84-foss-2024a
1818```
1919
2020* (This data was automatically generated on {{modules_last_updated}})*
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2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | Biopython/1.84-foss-2024a| x| x| x| -| x| x| x|
2425| Biopython/1.84-foss-2023b| x| x| x| x| x| x| x|
2526| Biopython/1.83-foss-2023a| x| x| x| x| x| x| x|
2627| Biopython/1.79-foss-2022a| -| -| -| -| -| x| x|
Original file line number Diff line number Diff line change @@ -14,13 +14,14 @@ The overview below shows which DIAMOND installations are available per HPC-UGent
1414To start using DIAMOND, load one of these modules using a ` module load ` command like:
1515
1616``` shell
17- module load DIAMOND/2.1.9 -GCC-13.2 .0
17+ module load DIAMOND/2.1.11 -GCC-13.3 .0
1818```
1919
2020* (This data was automatically generated on {{modules_last_updated}})*
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2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | DIAMOND/2.1.11-GCC-13.3.0| x| x| x| -| x| x| x|
2425| DIAMOND/2.1.9-GCC-13.2.0| x| x| x| x| x| -| -|
2526| DIAMOND/2.1.8-GCC-12.3.0| x| x| x| x| x| x| x|
2627| DIAMOND/2.1.8-GCC-12.2.0| -| -| -| -| -| x| x|
Original file line number Diff line number Diff line change @@ -14,11 +14,12 @@ The overview below shows which Exonerate installations are available per HPC-UGe
1414To start using Exonerate, load one of these modules using a ` module load ` command like:
1515
1616``` shell
17- module load Exonerate/2.4.0-GCC-12 .3.0
17+ module load Exonerate/2.4.0-GCC-13 .3.0
1818```
1919
2020* (This data was automatically generated on {{modules_last_updated}})*
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2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | Exonerate/2.4.0-GCC-13.3.0| x| x| x| -| x| x| x|
2425| Exonerate/2.4.0-GCC-12.3.0| x| x| x| x| x| x| x|
Original file line number Diff line number Diff line change 1+ ---
2+ hide :
3+ - toc
4+ ---
5+
6+ Hybpiper
7+ ========
8+
9+ # Available modules
10+
11+
12+ The overview below shows which Hybpiper installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).
13+
14+ To start using Hybpiper, load one of these modules using a ` module load ` command like:
15+
16+ ``` shell
17+ module load Hybpiper/2.3.2-foss-2024a
18+ ```
19+
20+ * (This data was automatically generated on {{modules_last_updated}})*
21+
22+ | | accelgor| doduo| donphan| gallade| joltik| litleo| shinx|
23+ | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | Hybpiper/2.3.2-foss-2024a| x| x| x| -| x| x| x|
Original file line number Diff line number Diff line change @@ -22,4 +22,4 @@ module load IGV/2.19.1-Java-17
2222| | accelgor| doduo| donphan| gallade| joltik| litleo| shinx|
2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
2424| IGV/2.19.1-Java-17| x| -| -| -| -| x| x|
25- | IGV/2.16.0-Java-11| x| x| - | x| - | x| x|
25+ | IGV/2.16.0-Java-11| x| x| x | x| x | x| x|
Original file line number Diff line number Diff line change @@ -14,11 +14,12 @@ The overview below shows which MAFFT installations are available per HPC-UGent T
1414To start using MAFFT, load one of these modules using a ` module load ` command like:
1515
1616``` shell
17- module load MAFFT/7.520 -GCC-12 .3.0-with-extensions
17+ module load MAFFT/7.526 -GCC-13 .3.0-with-extensions
1818```
1919
2020* (This data was automatically generated on {{modules_last_updated}})*
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2323| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
24+ | MAFFT/7.526-GCC-13.3.0-with-extensions| x| x| x| -| x| x| x|
2425| MAFFT/7.520-GCC-12.3.0-with-extensions| x| x| x| x| x| x| x|
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