BANC-project/.gitignore at main · htem/BANC-project · GitHub

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# Images files
*.nrrd
*.lsm
*.lsm.bz2

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# raw neuron data, for now
.rda
*.rda
.rda
*.rds
.swc
*.swc

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf
images/plotly/*

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/
fig/Identification_PNs/Validation_uPNs_cache/
fig/Symmetry_PNs/Symmetry_PNs_Connectivity_cache/
fig/Symmetry_PNs/Symmetry_PNs_Morphology_cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md
.Rproj.user

# Python-related stuff
/.ipynb_checkpoints/
.ipynb_checkpoints

# OS generated files
.DS_Store
.DS_Store?
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db
.png

# Large files
*.nd2
*.obj
*.nrrd
*.tifs
*.zip
*.czi

# Jingxuan analysis intermediate files
**/cascade_results/
**/__pycache__/
slurm-*.out
data/cascade/
**/sbatch_logs/
*.html

# Cascade files
data/influence/frankenbrain_v1.5/
data/cascade/frankenbrain_v1.5/an
data/cascade/frankenbrain_v1.5/an2
data/cascade/frankenbrain_v1.5/dn
data/cascade/frankenbrain_v1.5/dn2
data/cascade/frankenbrain_v1.5/mb_project

# PNG files in extra and neuroanatomy subdirectories
figures/*/links/neuroanatomy/*.pdf

# PNG files in figure_4 links directory (including all subdirectories)
figures/figure_4/links/**/*.png
figures/figures_biorxiv/
*banc_meta.csv


# R data
.RDataTmp
figures/figure_1/figure_1.ai